Clostridium acetobutylicum DSM 1731: SMB_G0800
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Entry
SMB_G0800 CDS
T01548
Symbol
cshA
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cae
Clostridium acetobutylicum DSM 1731
Pathway
cae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMB_G0800 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cae03019
]
SMB_G0800 (cshA)
03009 Ribosome biogenesis [BR:
cae03009
]
SMB_G0800 (cshA)
Enzymes [BR:
cae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SMB_G0800 (cshA)
Messenger RNA biogenesis [BR:
cae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SMB_G0800 (cshA)
Ribosome biogenesis [BR:
cae03009
]
Prokaryotic type
rRNA helicases
SMB_G0800 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AEI34567
LinkDB
All DBs
Position
complement(906510..907634)
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AA seq
374 aa
AA seq
DB search
MNFKKLGISEALVEVLKKSGITEPTPVQAESISHIKGGRDVIGEAQTGTGKTLAFLLPIF
ENISPTLSAVQALIVTPTRELALQITEQALKLKEAKDINILAAYGGKDIASQQKKLRGST
HLIIATPGRLLDLIQRKTVDLRKLKSFVLDEADQMLLMGFKNDVEEILKNAPKKRQMLCF
SATISPAVKKLAYRYMTNPLTISTKKKEVTLENIEQFVVETTDRKKLEDLCTALKQDNPF
MAIIFGRTKRRVDELEVELYRRGFDCQKLHSDLTQTKRERIMKSFRNGDFQYLLATDVAS
RGLDISGVSHIYNYDVPDNPESYIHRIGRTGRAGEEGYTCLFAAERDKRKLEDIEAAIKF
KIPRRDLTGGKNER
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaaaaaattaggaattagtgaagcactagttgaggtgctaaaaaagagtggt
attactgagccaactccagttcaagctgagagtataagccacattaaaggtggaagagat
gtcattggagaagcccaaacaggtaccggaaaaacccttgcatttctactccctattttt
gaaaatatatcaccaacattaagcgcagttcaagccttgattgtaacacctacaagagag
cttgccctccaaataacagaacaagctttaaagcttaaagaagctaaggatataaatata
ttagctgcctatggtggtaaggatatagcctcccaacaaaaaaaacttagaggaagcact
catcttattattgcaacaccaggtagacttttagatcttatccagagaaaaactgtagat
ctaagaaagttaaaaagttttgtacttgacgaagcagatcaaatgcttttaatgggcttt
aaaaatgatgtagaagaaatccttaaaaatgctcctaaaaaaaggcaaatgctttgtttc
tctgcaactataagccctgctgtaaaaaaattagcctatagatacatgactaaccctctt
acaatatctacaaagaaaaaagaggttactttagaaaacattgaacaatttgtagtagaa
accactgacagaaaaaaattagaagatttgtgtaccgcattaaagcaagataatcccttt
atggctatcatatttggaagaaccaaaagaagagtagatgaacttgaagtagagctttat
agaagaggttttgactgtcaaaaacttcacagtgatttaactcaaacaaaacgtgaaaga
attatgaagtcctttagaaatggtgattttcaataccttctagctacagatgtagcatca
agaggtctagatataagtggagtaagtcatatatataattatgatgttccagataatcct
gaaagctacatacatcgtataggtagaactggaagagctggagaagaaggctacacttgc
ttgttcgctgctgaaagagataaaagaaaattagaagatatagaagctgccattaaattt
aagatacctagaagagatttaactggaggtaaaaatgaacgctaa
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