Clostridium acetobutylicum DSM 1731: SMB_G1044
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Entry
SMB_G1044 CDS
T01548
Symbol
helD
Name
(GenBank) superfamily I DNA/RNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cae
Clostridium acetobutylicum DSM 1731
Pathway
cae03420
Nucleotide excision repair
cae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SMB_G1044 (helD)
03430 Mismatch repair
SMB_G1044 (helD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cae03400
]
SMB_G1044 (helD)
Enzymes [BR:
cae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SMB_G1044 (helD)
DNA repair and recombination proteins [BR:
cae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SMB_G1044 (helD)
MMR (mismatch excision repair)
Other MMR factors
SMB_G1044 (helD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
DEAD
UvrD_C_2
SLFN-g3_helicase
AAA_30
AAA_22
ResIII
AAA_11
ITPK1_preATP-grasp
AAA_16
NACHT
NPHP3_N
RIG-I_C
DUF1284
Motif
Other DBs
NCBI-ProteinID:
AEI34341
LinkDB
All DBs
Position
1175947..1178238
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AA seq
763 aa
AA seq
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MSIEQKEFKYEEDKLKDTENWIENQISEIKKDNVEFENKIVDLKKQSKGKYSEELEITEK
LYNITHKNLEKYNEAKVTPYFARIDFRERKRTEVESYYIGKFGLGDSRNGEEKIIDWRAP
IADLYYSGTAGKVAYKIYSGYVDGELYLKRKFLIQDKKLKDAFDDAINEIILKAQGGSEN
NLVDEFLRINLEKNVSSKLKDVVATIQKEQNDIIRSEKNSALVVQGSAGSGKTTVALHRL
AYLIYKYNKSLSGKDVLVVAPNRIFLDYISDVLPSLGANTVVQETFEDIALKVLGIKSKV
YTKDKKLAYIFEDKNEEDKKLVIKTSNFKGSLLFKEMIDKYLKTIEEKDSVVEDIKIAGY
VLFDKKEIRRLFCEDMSHLPIDKRKDEIKRYFNLKIKDKIINICDKISFTYEYNIARVKK
NMEDGVERRKKLIALYDERDNKRNDIIKNAPVVMDNYFEAWKHTDTAVILDRFFNSKDVY
NELAKGKISQSLWKHIKSEFNQNREKKVIDSDDLAAMLYIKFNIEGNDKFNFKHIIIDEA
QDYSIFQFSALKNLCSSNSFTIVGDLGQGIYYYKGINDWASINKNVFEDNFNYVALSQSY
RSTVEIIEFANEVLKKQDIKLEPAKPVLRHGDKPEVIEFATNKEFVERADEIVERLEKLD
KKNIAIIGKTYDECKKINDALRKYSKNKWKVIRENDKSFETTKIVIPSYITKGLEFDCSI
IYNCSEDNYKDTELDKKTLYVSLTRALHYEYIFFKGKKSSLIK
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
ttgtctatagaacaaaaagagtttaagtatgaagaggataaactgaaagatactgaaaat
tggatagaaaatcagatatctgaaataaaaaaagataacgttgaatttgaaaacaaaata
gtagatttaaaaaaacaatctaaggggaagtacagtgaagaactagaaataactgaaaaa
ctttacaatattacacataaaaatcttgaaaaatacaatgaagctaaggtaactccatac
tttgcgagaattgattttagagagagaaaaagaactgaagttgagagctattatatagga
aagtttggactaggagatagcagaaatggagaagaaaagataatagactggagagcacct
attgctgatttatattatagtggtactgctggtaaggttgcatataaaatttattcaggc
tatgtagatggggaactttatctaaagagaaaatttttaatacaggataaaaaactaaag
gatgcctttgatgatgcaataaatgaaataattttaaaagctcaaggtggttctgagaat
aatctagttgatgagtttttaagaataaatcttgaaaagaatgtaagtagtaagttaaag
gatgtagttgcaactatacaaaaggagcaaaatgatataataagaagtgaaaaaaattct
gcacttgtagttcaaggatcagctggctcgggtaaaacaactgtagcacttcatagatta
gcttaccttatatataagtataataagtccttaagtggaaaagatgttcttgtggtagcg
cctaataggattttcttggattatatttcagatgtgcttcctagtcttggagctaatact
gtggttcaagaaacttttgaggatatagccttaaaggttttaggaataaaatctaaagta
tatacaaaggataaaaaacttgcatacatatttgaagataaaaatgaagaagataaaaaa
cttgtaattaaaacaagtaattttaaaggttctctattatttaaggaaatgatagataaa
tatctaaaaacaattgaagaaaaggatagtgttgtagaggatattaaaatagcgggatat
gtcttatttgataagaaggaaataagaagacttttttgtgaagacatgtcacatttacct
atagataaaagaaaagatgaaataaaaaggtattttaaccttaagataaaggataagatt
ataaacatttgtgataaaatttcttttacatacgagtataatattgcaagagtaaaaaag
aatatggaggacggagtagagagaagaaagaaattaatagctctttacgatgaaagagac
aataaaagaaatgacataataaaaaatgcaccagttgtaatggacaattattttgaagct
tggaagcatacagatacagcagttattctggatagattttttaatagcaaagatgtatac
aatgaactggcaaaaggaaagatatcacaaagtctttggaagcacataaaatcagaattt
aatcaaaatagagagaaaaaggtaattgacagtgatgatttagctgcaatgctgtatata
aaatttaatatagaaggaaatgataaatttaactttaaacacataataatagatgaagca
caggattacagtatatttcaattttcagctttaaaaaatttatgtagtagtaactctttt
actatagtaggtgacttagggcagggaatatattactataaaggaataaatgattgggct
tctataaataaaaatgtttttgaagataatttcaattatgtagcacttagtcaaagttat
cgttcaacagtggaaataatagaatttgcaaatgaagttttaaagaaacaggatataaaa
ttggaaccagcaaaacctgttttaagacatggtgataagccagaagtaattgaatttgct
actaacaaggaatttgtagagagagcagatgagattgtagaaaggcttgaaaaactagat
aagaagaatatagcgattataggaaaaacttatgatgagtgcaaaaaaattaacgacgct
ctaagaaaatatagtaaaaataagtggaaagtaataagggaaaatgataaaagctttgaa
acaacaaaaatagtcataccgtcgtatataactaagggacttgagtttgattgcagtatt
atctataattgcagtgaggataattataaagatacagaacttgataagaagacactgtat
gtttcacttacaagagcgctgcactatgaatatatctttttcaagggaaaaaaatccagc
cttattaaataa
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