Clostridium acetobutylicum DSM 1731: SMB_G1218
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Entry
SMB_G1218 CDS
T01548
Symbol
yorK
Name
(GenBank) single-stranded-DNA-specific exonuclease (recJ)
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cae
Clostridium acetobutylicum DSM 1731
Pathway
cae03410
Base excision repair
cae03430
Mismatch repair
cae03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SMB_G1218 (yorK)
03430 Mismatch repair
SMB_G1218 (yorK)
03440 Homologous recombination
SMB_G1218 (yorK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cae03400
]
SMB_G1218 (yorK)
DNA repair and recombination proteins [BR:
cae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
SMB_G1218 (yorK)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
SMB_G1218 (yorK)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SMB_G1218 (yorK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
DUF3890
DUF4175
Motif
Other DBs
NCBI-ProteinID:
AEI33661
LinkDB
All DBs
Position
1348374..1350020
Genome browser
AA seq
548 aa
AA seq
DB search
MEKQWVNLNKKPTDLSIENILRNRGIKNLKHFLNPLPSDFIPLSKLKRIFEAAEIIIKGI
KENKKFTIFYDCDLDGTAAGTIMRKYLLNFTPNVDIAYSIGKEHGLSSINLDNIIQNTDI
LIAVDSSTGNHKEQDYLKQNGVEVIIYDHHDEPNNQNVCIVNSQFEDYPNKQLSGAGVVW
KGCLAIDSLMKTKYALNYVDLAAAGILADVMDVGESYMENRLIITMGFKHLVNVGLKTAI
GTYDFNSTSILFSVAPLVNAAIRMRENKIAIDFLFEEEKKQSKKLLKKLKEIKEKQNKLV
DISMINLEFQMKQNNSENKKVSFGFVENKGIAGVIATKVCSKFDKPAIVLSYPNPAKDFD
KYIGSLRSNIDFKTIVNNTKLAKSQGHERAAGIEIKKENLEKLLDTLEQKLKNKEFKKVD
KFDLLIKAEFLTLNLIKQIEKINRLTGKNFQPINVVLENVVPVDFTIMIKKHIKFNFRDI
EFVYWNSIDKIQDFKTTCSGLYRSLSVMGIPQVSYFRGREKKQIMIQDYKDVKDNFEFLK
GYTTGDIL
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaaacaatgggtaaatttaaacaaaaaacctacagatttatcaatagaaaatatt
ttgagaaatagagggataaaaaatttaaaacattttcttaatccattaccttctgatttc
attccattaagtaaattaaaaagaatatttgaagcagcagaaataataataaaaggaata
aaagaaaataagaaatttacaatcttctatgattgtgacttagatggtactgccgcagga
acaattatgagaaaatatttgttgaactttacacctaatgttgatattgcttatagtatt
ggaaaagaacatggtttaagcagtattaatttagataatattatccaaaatacagatatt
ttaattgctgtagactctagtacaggcaaccacaaggagcaagattatttaaaacaaaat
ggggttgaagttataatatatgatcatcatgatgagcctaacaatcagaatgtttgtatt
gttaatagtcagtttgaagattacccaaataaacaattaagtggagcaggagtagtatgg
aaaggctgtcttgctatagatagcctaatgaaaacaaaatatgctttgaattatgttgat
ttagcagcagcaggaatcttagcggatgtaatggatgttggtgaatcatatatggagaac
aggttaattataactatggggtttaagcaccttgttaatgttggattaaagactgctata
ggaacgtatgattttaatagtacatccatattattttctgtggcaccgctggtaaatgca
gctataaggatgagagaaaataaaatagcaattgattttttatttgaagaagaaaaaaaa
cagtcaaaaaaattacttaaaaaattaaaagaaataaaggaaaagcagaataagttggtt
gatatatctatgatcaatttggaatttcaaatgaagcaaaataactccgaaaacaaaaaa
gtatcttttggatttgttgagaataaaggcatagctggagttattgctacaaaagtttgt
agtaaatttgataagccagcaatagttttaagttacccaaatccagcaaaagattttgat
aaatatataggaagtttaaggtctaatatagattttaaaactattgtaaataatacaaaa
ttagcaaaatcacaagggcatgaaagagcagcaggaatagaaataaaaaaagaaaattta
gaaaaattgcttgatacattagaacaaaaattaaaaaataaggagtttaaaaaggtagat
aagtttgacttgttaataaaagcagaatttttaacattaaatttgattaagcaaatagag
aaaataaataggttaacaggtaaaaattttcaaccaataaatgtggttttggagaatgtt
gtgccagtagactttaccataatgataaagaagcatataaaatttaattttagagatata
gagtttgtatattggaattctattgataaaatacaagactttaagactacttgtagcggt
ttgtatagaagtcttagtgttatgggaatacctcaagtctcatattttagaggaagagag
aaaaagcaaattatgatacaagattataaagatgttaaagataacttcgaatttttaaaa
ggatatacaacaggagatatattataa
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