Clostridium acetobutylicum DSM 1731: SMB_G1833
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Entry
SMB_G1833 CDS
T01548
Symbol
pnpA
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cae
Clostridium acetobutylicum DSM 1731
Pathway
cae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMB_G1833 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cae03019
]
SMB_G1833 (pnpA)
03016 Transfer RNA biogenesis [BR:
cae03016
]
SMB_G1833 (pnpA)
Enzymes [BR:
cae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SMB_G1833 (pnpA)
Messenger RNA biogenesis [BR:
cae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SMB_G1833 (pnpA)
Transfer RNA biogenesis [BR:
cae03016
]
Prokaryotic type
tRNA degradation factors
SMB_G1833 (pnpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH-I_KHDC4-BBP
KH_2
Mug135_C
EXOSC1
S1_RRP5
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
AEI33021
LinkDB
All DBs
Position
1957808..1959919
Genome browser
AA seq
703 aa
AA seq
DB search
MLHFLETDIAGRKLKVECGKTGMLSNCAMFISYGDTVVMVNVNASEKPREGIDFFPLSIE
YEERQYSVGKIPGGFVKREGRPSEKSILHARAIDRPLRPLFPKGYRNDVQVVCTVMSVEQ
DNLPEILAMNGASMALCLSDIPFTTPVATVSVGCIDGKFVLNPTLEEREKSSLDLTVCAT
NERVMMLEAGADEIPEDLMIAAIDFGFNACQDIVAFQEKAMKEFGKEKVTPELYHPKEEI
EKDVTEFAFESIKEIMYITDRDERNLRLREIKEKISNEFAEKYPDDGADIDEVVYTLQKK
VVRNMLLKEHRRPDGRRFDEIRPISCDVDLLPRTHGSGLFTRGLTQVMTVTTLGPIGDAQ
VIDGLGVEESKRYMHHYNFPPYSTGEVKPLRGPNRREIGHGALAEKALVPLIPSEEEFPY
TIRLVSEVLSSNGSTSQASVCGSTLALMDAGVPIKRPAAGIAMGLITSEDLSKEAVITDI
QGLEDFFGDMDFKVAGTEKGITAIQVDTKIHGLSKYCIKTAINDARKARLFILEKMVACI
NEPRKELSTYAPRAYTINIDTDKIRTLIGTGGKTINKIIEETGVKIDIREDGTVFVLSSD
ADSANRALKMIDDLTKDVKVGEVYLGKVTKITNFGAFVEVLPGKEGLVHISKLDINKVNK
VEDVVSVGDEILVKVTDIDNQGRVNLSRKDVLKQQESNNSKEK
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgttacattttttagaaacagatattgccggaagaaaacttaaagttgaatgtggcaaa
actggtatgctttcaaactgtgctatgttcataagttacggcgatactgttgtaatggtt
aatgtcaatgcctcagaaaagccaagagaaggtattgatttctttcctttgagtattgaa
tacgaagaaagacaatattcagtaggaaaaatacctgggggatttgtaaaaagagaaggt
agaccttctgaaaaatctatcttacatgcaagagctatagatagacctttaagaccattg
tttcctaaagggtacagaaatgatgttcaggtggtatgtactgtaatgtctgtagagcag
gataacttaccagaaatacttgctatgaacggtgcatcaatggctctatgtttatctgat
attccatttacaacacctgttgctacagtatctgttgggtgtattgatggtaaatttgtt
ttaaatcctacattagaggaaagagaaaaaagttctcttgatttaactgtttgtgccaca
aatgaaagagtaatgatgttagaggctggtgccgatgaaattcctgaggatttaatgatt
gctgcaatagattttggatttaatgcttgtcaagatatagtcgcttttcaagaaaaagca
atgaaagaattcggaaaagaaaaggttaccccagaattatatcatcctaaagaagaaatt
gaaaaagacgttactgaatttgcttttgaatctattaaggaaattatgtacataacggat
agggatgaacgaaatttaagattaagagagataaaagaaaaaatatcaaatgagtttgca
gaaaagtatcctgatgatggtgctgatatagatgaagttgtatatacacttcaaaagaag
gtcgttagaaatatgttattaaaagaacatagaagacctgacggaagaagatttgatgaa
ataagacctataagttgtgatgtagatcttttgcctagaacccatggaagtggtttattt
acaagaggtttaacacaggttatgacggttacaactttaggaccaattggcgatgctcaa
gttatagatggtttaggagtagaggaatctaaacgatatatgcatcattataacttccca
ccatattctacaggagaagttaaaccattaagaggaccaaatagaagagagataggtcat
ggagctcttgctgagaaagccctagtgccattaataccatctgaagaagaatttccgtat
acaataagacttgtgtcagaagttttaagttcaaatggttcaacatcccaagcaagtgta
tgtggaagtactttagcactcatggatgcaggtgtaccaataaagagaccagcagccgga
atagctatgggacttataacaagtgaagatctttcaaaagaagctgttattacagacata
caaggcttagaagacttttttggcgatatggattttaaagttgcaggtactgagaaaggt
ataacagcaattcaagttgatacaaaaatacatggtttatctaagtactgtataaaaact
gcaataaatgatgctagaaaagctagattatttatactcgaaaaaatggttgcatgcata
aatgaacctagaaaagaattatcaacatatgcaccaagagcgtatactataaatatagat
acagataaaataagaactcttataggaactggcggaaaaacaatcaataaaataattgag
gaaactggtgttaaaatagacattagagaagatggaactgtatttgttctatctagtgat
gcagattcagctaacagggcgttaaagatgattgatgatcttacaaaagatgttaaagta
ggagaagtttatttaggaaaagtaaccaagataactaacttcggagcttttgttgaagtg
ctcccaggtaaggaaggtcttgtccatatatcaaaacttgatataaataaagtaaataaa
gtagaagatgtagtttcagttggcgatgagatactagttaaagttactgatatagataat
caaggaagagtaaatttatcaagaaaagatgtattaaaacaacaagaatcaaataattct
aaagaaaaataa
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