Clostridium acetobutylicum DSM 1731: SMB_G3177
Help
Entry
SMB_G3177 CDS
T01548
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cae
Clostridium acetobutylicum DSM 1731
Pathway
cae03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cae00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SMB_G3177 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cae03021
]
SMB_G3177 (rpoC)
03400 DNA repair and recombination proteins [BR:
cae03400
]
SMB_G3177 (rpoC)
Enzymes [BR:
cae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SMB_G3177 (rpoC)
Transcription machinery [BR:
cae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SMB_G3177 (rpoC)
DNA repair and recombination proteins [BR:
cae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SMB_G3177 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
zf-RING_4
TENA_THI-4
Motif
Other DBs
NCBI-ProteinID:
AEI33765
LinkDB
All DBs
Position
complement(3276898..3280446)
Genome browser
AA seq
1182 aa
AA seq
DB search
MELNKFDALQIGLASPEKIREWSRGEVKKPETINYRTLKPEKDGLFCERIFGPIKDWECH
CGKYKRVRYKGIVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDMS
PRALEKVLYFASYLVLDPKETPLLKKQLLNEKEYREAADKYGEESFEAGMGAESIKKLLQ
EIDLNQLSEELKENLKTSTGQKKVRIIRRLEVVESFRKSTNKPEWMIMDVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKMYQCGLPKE
MALELFKPFVMKKLVETGAAHNIKSAKRMVERVQNQVWDVLEEVISDHPVMLNRAPTLHR
LGIQAFQPILVEGRAIKLHPLACTAYNADFDGDQMAVHVPLSVEAQAESRFLMLAAHNIL
KPSDGKPVCVPTQDMVLGSYYLTIDKDGVKGEGKAFTNVDEALMAYQLGEIDIHAKIKVR
LEKEIDGKMVSGIIETTIGKLIFNESIPQDLGFIDRSIAGNELLLEINFLVGKKNLGGII
DKCYRKHGPTKTSIMLDKIKAKGYHYSTISAITVSTSDMTVPPNKGELMSEAETAVEKIE
KMYRRGFISDDERYERVISTWTKTTEKVADALMDNLDRFNPIFMMADSGARGSKSQIKQL
AGMRGLMANPSGKIIELPIKASFREGLDVLEYFISTHGARKGNADTALKTADSGYLTRRL
VDVSQDVIVRNEDCGATEGFEVSEIKEGNEVIESLSERLIGRYTSEDIIDPTSKEVLVKQ
NEYIDEDKAIRIEKVGVKKVKIRSVFTCNCKYGVCAKCYGMDMATAEKISMGEAVGIVAA
QSIGEPGTQLTMRTFHTGGVAGSDITQGLPRVEELFEARKPKGLAIVSEVSGTVRIEETK
KKRIVFIATESGEEVSYDIPFGSSLKVKNGETIGAGDEITEGSVNPHDIIRIKGVNAVKN
YLLSEVQKVYRLQGVDINDKHLEVVIRQMTRKVKVEDSGDTELLPGTMIDIFDFRDENKK
VEENGGRPAQARVSLLGITKAALATDSFLSAASFQETTRVLTDAAIKGKSDPLVGLKENV
TIGKLIPAGTGMNRYKNIEIDPLVTETNADDENFIAEDKIEG
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
ttggaattaaataaatttgatgcattgcaaataggattggcttcacctgaaaagataaga
gagtggtccagaggggaagtaaaaaaaccagaaactataaactataggacattaaaacct
gaaaaagacggtctgttctgtgaaagaatatttggaccaataaaggattgggaatgtcac
tgcggaaaatataaaagagttagatataagggtatagtttgcgatcgatgtggagtagaa
gtaactaaatcaaaggttagacgtgagagaatggggcatatagaactggcagccccagta
tctcatatatggtactttaaaggtataccatcacgtatgggacttatacttgatatgtct
ccaagagctttggagaaagtattgtattttgcatcttatcttgttttagatcctaaagaa
actcctttacttaaaaagcagcttttaaatgagaaagagtatagagaagcagctgataag
tatggcgaagaatcatttgaagctggaatgggtgcagagtcaattaagaagttacttcaa
gaaatagacttgaatcaattatcagaagaacttaaggaaaacttgaaaacaagtacagga
caaaaaaaggtaagaattataagaagacttgaagtagttgagtcattcagaaaatccact
aataagccagagtggatgataatggatgtaatacctgtaatacctcctgacttaagacct
atggttcaattggatggtggaagatttgctacttctgatttaaatgatttatatagaaga
gttataaatagaaataatagattgaaaaaattattagatcttggagcaccagatataata
gtaagaaatgaaaaaagaatgcttcaagaagctgttgatgctcttatagataatggtaga
agaggaagacctgtaacaggacctggaaatagaccattaaaatcattatctgacatgctt
aagggtaagcaaggaaggtttagacaaaacttacttggaaaacgtgttgactattcagga
cgttctgttatagttgttggaccagatttaaaaatgtatcagtgtggacttccaaaagag
atggcacttgaattatttaagccttttgtaatgaaaaaacttgttgaaacaggagctgca
cataatataaagagtgcaaagagaatggttgaaagagttcagaatcaagtgtgggatgta
cttgaagaagttatttctgatcatccagtaatgttaaaccgtgcccctacactacataga
cttggaattcaagcattccaacctatattagtagaaggaagggcaataaaacttcatcca
cttgcatgtacagcatataacgcagattttgatggagaccagatggctgttcacgtaccg
ctatcggttgaagctcaagcagagtcaagatttcttatgcttgcagcacataatatatta
aagccttcagatggtaagccagtttgcgtacctactcaggatatggtacttggatcatac
taccttacaatagataaggatggagttaagggtgaaggaaaagcctttactaatgttgat
gaagcactaatggcatatcaacttggagagattgatatacatgctaaaataaaagtaaga
ttagaaaaagaaatagatggaaaaatggtaagtggaataatagaaactaccattggaaaa
cttattttcaacgaatctatacctcaagatttaggatttatagatagaagtattgccgga
aatgaattacttcttgaaatcaacttccttgttggtaagaagaatttaggtggaataata
gataaatgctatagaaagcatggacctactaaaactagtattatgcttgataagataaaa
gcaaaaggatatcattattcaacaataagtgctataacagtttcaacttctgatatgact
gtaccacctaataaaggagagctcatgtctgaggcagaaacagcagttgaaaaaatagaa
aagatgtatagaagaggattcatatccgatgatgaaagatatgaaagagtaatatccaca
tggactaaaacaactgaaaaagttgcagatgcccttatggataatcttgacagatttaat
cctatcttcatgatggctgattctggagccagaggttcaaagagtcagattaaacagctt
gctggaatgagaggacttatggcaaatccttctggtaagataatagagcttcctataaaa
gcttccttcagagaaggtctcgacgtattagagtactttatctcaacacatggagctaga
aaaggtaatgcggatactgctcttaaaacagccgattcaggataccttacaagaagactt
gttgatgtaagccaagacgttatagtaagaaatgaagattgtggagcaacagagggtttt
gaagtttctgaaataaaagaaggaaacgaagtaattgaaagcttatctgaaagattaata
ggaagatatacatcagaagatataatagatcctacaagtaaagaagttcttgtaaagcaa
aatgaatatatagatgaagataaggctataagaatagaaaaagttggagttaagaaagta
aaaataagatctgtatttacatgtaattgtaaatatggagtttgcgcaaaatgttatgga
atggatatggcaactgctgaaaagataagcatgggagaagcggttggtatagtagcagca
cagtcaattggagagcctggtacacagcttacaatgagaacattccatacaggtggagtt
gcaggatcagatataactcaaggtcttccaagagttgaggaattgtttgaggcaagaaaa
cctaagggacttgcaattgtaagtgaagtatctggtacagtaagaatagaagagactaag
aaaaagagaatagtatttatagctactgaaagtggagaagaagtaagttatgatatacca
tttggttctagtctaaaagttaaaaatggtgagactataggtgctggagatgaaatcaca
gagggttctgtaaatcctcatgatattatcagaataaagggagtaaatgctgttaaaaat
tacttgctttctgaggttcagaaggtgtatagactacagggtgttgatataaacgataag
catcttgaagttgtaattaggcagatgacgagaaaagttaaagtagaggactcaggtgat
actgaattacttccaggaactatgattgatatatttgattttagggatgaaaacaaaaaa
gtagaagagaatggtggaagacctgctcaagccagagtatcattgcttggtataacaaaa
gcagcactagctactgattcgttcttatcagcagcatcattccaagaaactacaagagtt
ttaacagatgcagcaataaaaggaaaatcagatcctcttgttggattaaaggaaaatgta
actataggaaagctaattccagcaggaacaggaatgaatagatacaagaacatagaaata
gatccattggttactgaaacaaacgctgatgatgaaaattttatagcagaagataaaatt
gaaggttaa
DBGET
integrated database retrieval system
