Caenibius sp. WL: K5X80_03305
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Entry
K5X80_03305 CDS
T08345
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
caen
Caenibius sp. WL
Brite
KEGG Orthology (KO) [BR:
caen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caen03032
]
K5X80_03305 (gyrB)
03400 DNA repair and recombination proteins [BR:
caen03400
]
K5X80_03305 (gyrB)
Enzymes [BR:
caen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
K5X80_03305 (gyrB)
DNA replication proteins [BR:
caen03032
]
Prokaryotic type
DNA Topoisomerases
K5X80_03305 (gyrB)
DNA repair and recombination proteins [BR:
caen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
K5X80_03305 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
GyrB_insert
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
QZP08827
LinkDB
All DBs
Position
complement(677944..680472)
Genome browser
AA seq
842 aa
AA seq
DB search
MAETSENAGENPGINTNGYGAESIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDN
AIDEALAGHCDLVLIELNPDGSVSVEDNGRGIPTGIHPEEGVSAAEVIMTQLHAGGKFEN
TSDDNAYKVSGGLHGVGVSVVNALSEWLELTIWRDGEEHWMRFRHGDAEAPLKVVGNGPA
GKKGTRVTFLASTDTFKNVTEFDFEKLEHRYRELAFLNSGVRILLRDKRGEEVKEHDLFY
EGGIAAFVQYLDRNKQPLLPEPIAISSERDGIGIEVALEWNDSYYENVLCFTNNIPQRDG
GTHLAAFRAALTRTLNGYAEKSGLLKKEKVNLTGDDMREGLTAIVSVKLPDPKFSSQTKD
KLVSSEVRQPLESLMADRLSDWLEENPANAKAVVGKIIDAAAAREAARRARELTRRKGVM
DIASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRDRHFQAILPLKGKILNVERARF
DRIIGSKEVGTLIQAMGTGIRDEFNLEKLRYHKIVIMTDADVDGAHIRTLLLTFFHRQMP
DIIKAGHLFIAQPPLYKVAKGRSEVYLKDNAALDRYLVEAGLNGRVLESASGARAGAELN
GLVDHAMRVRSLMGFIPRRYNPEIIEVLALAGGLDPDLTPEARQAALIRTAQHLEMSDRE
AKWTAMLGEDGTIRIERLWRGVVDHHAIEASFITSAEARKLARLAGEQADVYATPAYLVR
GGGAEEAPEPDATAEDDGESAVPIARPVANDGAITRPSALLDAVLANGRKGLSISRYKGL
GEMNAEQLWETTLDPENRVLLQVKVEDADVTDEIFTRLMGDVVEPRRDFIQENALNVANL
DV
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggcagagacatccgagaacgccggcgaaaaccccggcatcaacaccaacggctatggc
gcggaatcgatcaaggtcctcaaaggcctcgatgccgtgcgcaagcgccccggcatgtac
atcggcgacaccgacgatggttcgggcctgcaccacatggtgttcgaagtgtccgacaac
gcgattgacgaagcgctggccgggcattgcgatctcgttctgatcgaactcaatcccgat
gggtccgtctcggtcgaggataacgggcgcggcattcccaccggcatccacccggaagaa
ggcgtttccgcggccgaagtgatcatgacccagctccacgcgggcgggaagttcgagaac
acgtccgacgacaacgcctacaaggtctcgggcggcctgcacggcgtgggcgtctcggtg
gtgaacgcgctgtccgaatggctggaactgaccatctggcgcgatggggaagaacactgg
atgcgcttccgccatggcgacgccgaagccccgctcaaagtcgtgggcaatggcccggcg
ggcaagaagggcacccgcgtcaccttccttgccagcaccgacacgttcaagaacgtcacc
gaattcgatttcgagaagctggaacatcgctaccgcgaactggcgttcctcaactcgggc
gtacgcatcctcctgcgtgacaagcgcggggaggaagtgaaggaacacgacctgttctac
gaaggcgggatcgccgctttcgtccagtacctcgaccgcaacaagcagccgttgctaccc
gaacctatcgcgatcagttctgaacgggacgggatcggcatcgaagtggcgctggaatgg
aacgattcctactacgaaaacgtgctgtgcttcaccaacaacatcccgcagcgcgatggc
ggcacgcatctggccgcgttccgtgccgcgctgacccgcacgctgaacggctatgccgag
aagtccggcctgctcaagaaagagaaggtcaatctcaccggcgatgacatgcgcgaaggg
ttgaccgcgatcgtttcggtcaaactgcccgatcccaaattttccagccagacgaaagat
aagctggtttcttccgaagtgcgccagccgctggaaagcctgatggccgaccggctgagc
gactggctggaagaaaatcccgccaatgccaaggcggtggtcggcaagatcatcgatgcc
gccgccgcgcgcgaagcggcccgccgcgcccgcgaactgacccgccgcaagggggtgatg
gatatcgcctcgctccccggcaagctggccgattgccaggaacgcgatccggccaagtcc
gaactgttcctggtcgaaggcgattccgccggcggctccgccaagcaggggcgcgaccgg
catttccaggcgatcctgccgctcaagggcaagattctcaatgtcgagcgcgcccggttc
gaccggatcatcggctccaaggaggtcggcacgctgatccaggcaatgggcaccggcatc
cgcgacgagttcaatctcgaaaagttgcgctaccacaagatcgtcatcatgaccgacgcc
gacgtggacggcgcgcatatccgcacgctgctgctgacgttcttccaccggcagatgccg
gatatcatcaaggccgggcacctgttcatcgctcagccgccgctttacaaggtcgccaaa
ggccgcagcgaagtctatctgaaagacaacgccgcgctcgaccgctatctcgtggaagcg
ggcctcaacggccgtgtgctggaaagcgccagcggcgcccgggcaggcgccgaactgaac
gggctggtggaccatgcaatgcgcgtgcgcagcctgatgggcttcatcccgcgccgctac
aatcccgaaatcatcgaagtgctggcgcttgccggcgggctcgatccggatctcacgccc
gaagcgcggcaggccgcgctgatccgtacggcgcagcatctcgaaatgagcgaccgcgaa
gcgaaatggacggcgatgctgggcgaagacggcacgatccgcatcgaacgtctgtggcgc
ggcgtggtcgatcaccatgcgatcgaagccagcttcatcaccagcgcggaagcccgcaag
ctggcccggctcgccggggaacaggccgatgtctatgccacgcccgcctatctggtgcgc
ggcggcggcgccgaagaagcgcccgaaccggacgccacggccgaggatgacggcgaaagc
gcggtccccatcgcccggccggtggccaacgacggcgcgatcacccggccgagcgcgctg
ctggatgcggtgcttgccaacggccgcaaggggctgtcgatttcccgctacaagggcctt
ggcgaaatgaacgcggagcaattgtgggaaaccacgcttgatcccgaaaatcgcgtgctc
ctgcaggtcaaagtcgaagacgccgacgtgaccgacgaaatcttcacccgcctgatgggc
gacgtggtcgaaccgcgccgcgatttcattcaggaaaacgcgctcaacgtcgccaatctc
gacgtttga
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