Caenibius sp. WL: K5X80_05560
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Entry
K5X80_05560 CDS
T08345
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
caen
Caenibius sp. WL
Pathway
caen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K5X80_05560 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caen03019
]
K5X80_05560 (recQ)
03400 DNA repair and recombination proteins [BR:
caen03400
]
K5X80_05560 (recQ)
Enzymes [BR:
caen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K5X80_05560 (recQ)
Messenger RNA biogenesis [BR:
caen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K5X80_05560 (recQ)
DNA repair and recombination proteins [BR:
caen03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K5X80_05560 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QZP09226
LinkDB
All DBs
Position
1189615..1191381
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AA seq
588 aa
AA seq
DB search
MHADPAILLHDIFGFETFRGVQEQVIGRVMAGQGTLAIMPTGAGKSLCYQLPAVALDGCC
IVISPLIALMHDQLRSARALGIRAASLTSADADWRETQDRLIAGDLDLLYVAPERASGEG
FRNLLERARICLFAIDEAHCVSEWGHDFRPDYRLLRPLLDAFPHVPRLALTATADGHTRS
DILAQLGLPPAGLVVSGFDRPNIRYAIKPRDGMQRQIADVLAANPGPGIVYVQTRAMAER
LAQSLAGKGRPVLPYHAGLDPQVRAGNQAAFLASEDMVMVATVAFGMGIDKPDVRFVIHA
GLPKSIESYYQESGRAGRDGDPAVATLLWGAEDFVRARQRIGEVDPARQQGERARIGALG
ALVETAGCRRAVLLRHFGEDPPASCGNCDNCLSPPVSVDATQTAQKLLSAVYRTGQSYGL
GHIEAVLTGKSNDRIAARGHDALSVFGIVSQDEAPLVKPVARALMVRDALETNEHGGLTL
GPSARPFLRGEEAVALVLPPARMRRGKRGDVANPVGDPLFDALRELRRDLAKEAGVPPYV
IFHDSTLREMALRRPRNDLDLGHIAGIGVRKREVYGQAFLDVIARFAQ
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgcacgcggacccagccattctcctgcacgatatcttcggattcgaaacctttcgcggg
gtgcaggaacaggtgatcggccgggtgatggcggggcagggaacgctcgccatcatgccc
accggggcgggcaaatcgctatgttaccagcttcccgccgtggcgctggacggctgttgt
atcgtcatttcgccgctgatcgctctgatgcacgatcagttgcgctccgcccgcgcgctc
ggcattcgcgccgccagcctgacgtccgccgacgccgactggcgcgaaacgcaggatcgg
ctgatcgcgggggacctcgacctgctctatgtcgcgccggaacgggcgagcggggaaggt
ttccgcaacctcctcgaacgcgcgcggatatgcctgttcgccatcgacgaggcgcactgc
gtctccgaatgggggcacgatttcagacccgattatcgcctgctgcgccctttgctcgat
gcattcccgcacgtgccgcgcctggcgctgacggcgacggccgacggccacacccgctcc
gatattctggcgcaattgggcctaccgcccgccgggctggtggtttcgggcttcgaccgg
cccaacatccgctatgcgatcaagccgcgcgacgggatgcagcggcagattgccgatgtg
ctggcggccaatccggggccgggtatcgtctatgtccaaacgcgcgcgatggcagagcgg
ctggcgcagtctctggcgggcaaggggcggccggtgttgccctatcatgccgggctcgat
ccgcaggtgcgcgcgggcaatcaggcggctttcctcgccagcgaagatatggtgatggtt
gcgaccgtcgctttcggcatggggatcgacaagcccgatgtccgcttcgtgattcatgcc
gggctgccgaaatcgatcgagagctattatcaggaaagcggccgagccgggcgcgatggt
gatccggctgtggccacgctgttatggggcgcggaggatttcgttcgtgcgcgccagcgg
atcggtgaagtcgaccccgcccgccagcagggagagagggcccgtatcggggcactgggt
gcgctggtggaaacggcggggtgcaggcgcgcggtcctgctgcgccatttcggcgaggac
ccgccggcaagctgtggcaattgcgacaattgcctgtcgcccccggtcagcgtcgatgcg
acgcagacggcgcagaagctgctatccgccgtgtaccgcaccgggcaatcctatggattg
ggccatatcgaagcggtgctgacgggcaagagcaacgatcggatcgcagcgcgcgggcac
gatgcgctttcggtgttcggtatcgtcagccaggatgaggcgccgctggtcaaacccgtg
gcgcgtgcgctgatggttcgcgatgcgctggaaacgaatgagcacggcggcctgacgctg
ggcccatcggcacgtccgttcctgcgcggcgaggaagcggtggcgctggtcctgccgcct
gcgcgcatgcggcggggcaagcgcggcgatgtggccaatccggtgggcgatccgctgttc
gatgcgctgcgcgaattgcgccgcgatctggcgaaggaagcgggcgtaccgccctatgtc
atcttccatgacagcactttgcgcgaaatggccctgcgccgcccgcgcaacgatctcgat
ctggggcatatcgccgggatcggcgtccgcaagcgggaggtgtacgggcaggcgtttctg
gatgtgatcgcgcgctttgcgcaatag
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