Caenibius sp. WL: K5X80_06220
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Entry
K5X80_06220 CDS
T08345
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
caen
Caenibius sp. WL
Pathway
caen03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
caen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K5X80_06220 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caen03021
]
K5X80_06220 (rpoB)
03400 DNA repair and recombination proteins [BR:
caen03400
]
K5X80_06220 (rpoB)
Enzymes [BR:
caen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K5X80_06220 (rpoB)
Transcription machinery [BR:
caen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K5X80_06220 (rpoB)
DNA repair and recombination proteins [BR:
caen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K5X80_06220 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
B
Siah-Interact_N
Motif
Other DBs
NCBI-ProteinID:
QZP09344
LinkDB
All DBs
Position
1345369..1349544
Genome browser
AA seq
1391 aa
AA seq
DB search
MASKAKAPAISGTAKKRIRKIFGDIHEVVQMPNLIEVQRESYEQFLRSDPSTGYVSGLEK
TLRSVFPIRDFAGTAELDFVHYELEDPKYDTIECRQRGITYAAPMKVTLRLIVFEVDQET
ETRSVLDIKEQDVYMGDMPLMTENGTFIINGTERVIVSQMHRSPGVLFDHDRGKTHSSGK
YLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLYALGLNDEEILHRFYETIV
WQRASGASGDGWKLPYSPEAWRGQKPAFDIVDAQSGEVIFPASQKISPRAANKAQKDGLE
TLLIPTEEIFGRYAANDMIDETTGRIWIEAGDEVTPENLEALDKAGIDAIELLDIDHVNT
GPWIRNTMKVDKAENRDEGLEAIYKVMRPGEPPTKETAEALFEGLFFDGDRYDLSAVGRV
KLNMRLGLDVDDTITTLRTDDILAVVKELVDLKDGKGEVDDIDNLGNRRVRSVGELLENQ
YRVGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSE
VTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVNK
YGFIETPYRKVIDGKVTSEVVYLSAMEEQKHTVAQASAETNADGSFVEELVSAREGGEFV
MAPRDSITLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKAEAPFVGTG
MEETVARDSGAAITALRAGIVDQVDATRIVIRAAGDIEPGKSGVDIYTLQKFQRSNQDTC
INQRPLVKVGDIINQGDILADGPSTDLGELALGRNSLVAFMPWNGYNYEDSILISERIVK
DDVFTSIHIEEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVHPGDILV
GKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVAGTIVEVRVFNRHGIEIDDR
TRAIQNEEIERLKKDSEDERAILNRATYNRLKDMLIGQTASAAPKGVKKGGEITEELLEE
VERHEWFKFAVADDKMQSQLEAVKAQYDEAVKGIQEKFEDRKEKLERGDELAPGVLKMVK
VFVAVKRKLQPGDKMAGRHGNKGVISRILPQEDMPFLEDGTPVDIVLNPLGVPSRMNVGQ
IFETHLGMAARGLGQQVTRALEEWREANPNPEAAAPPEAVREVLKDIYGEQYHAELDARS
TEELVELAGNLKNGVPMGTPVFDGAREADVSAMLEKANLPTSGQVTLFDGRTGEAFDRKV
TVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAY
TLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELSSLTDE
EDGDEWPEAAE
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcaaggcgaaagctccggccatctccggcaccgcgaagaagcgcatccgcaag
attttcggcgacatccacgaagtggtgcagatgccgaatctgatcgaggtgcagcgtgaa
agctatgagcagttcctgcgctccgatccgtcgacgggttacgtctcgggtctggaaaag
acgctgcgttcggttttcccgatccgcgatttcgcgggcacggccgaactggacttcgtg
cattacgaactggaagatccgaagtacgacacgatcgaatgccgccagcgcggcatcacg
tacgcggcgccgatgaaagtgacgctgcgcctgatcgtgttcgaagtcgatcaggaaacc
gaaacccgttccgtgctcgatatcaaggagcaggacgtgtacatgggcgacatgccgctc
atgaccgagaacggcacgttcatcatcaacggcaccgaacgcgtgatcgtgtcgcagatg
caccgttcgccgggcgtgctgttcgatcatgaccgcggcaagacgcactcttcgggcaag
tacctcttcgctgcccgcgtcattccctatcgcggttcgtggctcgatttcgaattcgac
gccaaggatatcgtcaacgtccgtatcgaccgcaagcgcaagctgccggtcaccgcgctg
ctctatgcgctgggcctcaacgacgaggaaatcctccaccgcttctatgaaacgattgtc
tggcagcgcgcttcgggcgcgtccggcgatggctggaagctgccctattcgcccgaggca
tggcgtggccagaagcccgcgttcgacatcgtcgatgcgcaatcgggtgaagtgatcttc
ccggcgagccagaagatcagcccgcgcgccgccaacaaggcgcagaaggacgggcttgaa
acgctgctgatcccgaccgaggaaatcttcggccgctacgccgccaacgacatgatcgac
gaaacgaccggtcgcatctggatcgaagcgggcgacgaagtgacgcctgaaaacctcgaa
gcgctggacaaggcaggcatcgacgcgatcgaactgctcgatatcgatcacgtcaacact
ggtccgtggatccgcaacacgatgaaggtcgacaaggccgaaaaccgtgatgaaggtctg
gaagcgatctacaaggtcatgcgcccgggcgaaccgccgacgaaggaaacggcggaagcg
ctgttcgaaggcctgttcttcgatggcgaccgctacgacctgtcggccgtgggccgcgtc
aagctcaacatgcgtctcggtctcgatgtcgatgacaccatcaccacgctgcgcacggac
gatatcctggccgtggtgaaggaactggtcgatctcaaggacggcaagggcgaagtcgac
gatatcgacaacctcggcaaccgccgcgtccgctcggtgggcgaactgctggaaaaccag
tatcgcgtcggcctgctgcgcatggaacgcgcggtcaaggaacgcatgtcctccgtcgac
gtgtcgaccgtgatgccgaacgaccttatcaacgccaaacccgccgtggccgcggtgcgc
gaattcttcggctccagccagctttcgcagttcatggaccagaccaacccgctgtcggaa
gtgacgcacaagcgccgcgtttcggcgctcgggccgggcggtctcacccgcgaacgcgcg
ggcttcgaagtccgcgacgttcacccgacgcactatggccgtatctgcccgatcgaaacg
ccggaaggcccgaacatcggtctgatcaactcgctcgcgtcgttcagccgcgtcaacaag
tacggcttcatcgaaacgccgtaccgcaaggtgatcgacggcaaggtgacgagcgaagtc
gtctatctctccgccatggaagagcagaagcacacggtggcgcaggcttcggccgaaacc
aatgccgatggcagcttcgtcgaagaactcgtctccgcgcgtgaaggcggcgaattcgtg
atggccccgcgtgacagcatcacgttgatggacgtcagccccaagcagctcgtttcggtt
gccgcctcgctcattccgttcctggaaaacgacgacgccaaccgcgcgctgatgggttcg
aacatgcaacgtcaggccgtgccgctggtgaaggcggaagcgccgttcgtcggcaccggc
atggaagaaaccgtggcgcgcgattcgggcgccgcgatcaccgcgctgcgggccgggatc
gtcgaccaggtcgacgcgacccgtatcgtgatccgcgccgcgggcgatatcgaacccggc
aagtcgggcgtcgatatctacacgctgcagaagttccagcgttccaaccaggacacctgc
atcaaccagcgtccgctggtgaaagtgggcgatatcatcaaccagggtgatatcctggcc
gatggtccctccaccgatctgggcgaactggcgctgggccgcaacagcctcgtcgcgttc
atgccgtggaatggctacaactacgaagactccatcctgatctccgaacggatcgtgaag
gatgacgtgttcacctcgatccatatcgaggagttcgaagtcatggcccgcgacaccaag
ttggggccggaagacattacccgcgacattccgaacgtcggcgaggaagcgctgcgcaac
ctcgacgaagcgggcatcgtctatatcggcgcggaagtgcatccgggcgatatcctcgtc
ggcaagatcacgccgaagggcgaaagcccgatgacgccggaagaaaagctgctgcgcgcg
atcttcggcgaaaaggccagcgacgtgcgcgacacttcgctccgcctgccgccgggcgtg
gccgggacgatcgtggaagtgcgcgtgttcaaccgccacggtatcgaaatcgacgaccgt
acccgcgcgatccagaacgaggaaatcgaacgcctcaagaaggatagcgaagacgaacgc
gccattctcaaccgcgcgacctacaaccgcctcaaggacatgctgatcggccagaccgct
tcggccgcgccgaagggcgtgaagaagggcggggaaatcaccgaggaactgctcgaagaa
gtcgaacgccacgaatggttcaagttcgcggttgccgacgacaagatgcagagccagctg
gaagccgtgaaggcccagtatgacgaagcggtgaagggcatccaggaaaagttcgaggac
cgtaaggaaaagctcgaacgcggtgacgaactggcccccggcgtgctcaagatggtcaag
gtcttcgtcgcggtgaaacgaaagctgcagccgggcgacaagatggccggccgccacggg
aacaagggtgtcatcagccgcatcctgccgcaggaagacatgcccttcctcgaagacggg
acgccggtcgatatcgtgctcaacccgctgggcgtgccgtcgcgcatgaacgtcgggcag
atcttcgaaacgcacctgggcatggccgcgcgcggtcttggccagcaggtcacccgggcg
ctggaggaatggcgcgaagccaatccgaacccggaagccgccgctccgcccgaagccgtc
cgcgaagtgctcaaggacatctacggcgaacagtaccatgccgaactggatgcccgttcg
accgaggaactggtcgaactggccgggaacctgaagaacggcgtgccgatgggcactccg
gtgttcgacggcgcccgcgaagccgacgtgtcggcgatgctggagaaggccaacctgccc
acttcgggccaggtcacgctgttcgacggccgcaccggcgaggcgttcgaccgcaaggtg
accgtgggctacatctacatgctcaagctgcaccaccttgtcgacgacaagatccacgcc
cgctcgatcggcccctacagcctcgtcacccagcagccgctgggcggtaaggcgcagttc
ggcggccagcgcttcggggaaatggaagtctgggcgcttcaggcctatggcgcggcctac
accttgcaggaaatgctcaccgtcaagtcggatgacgttgtcggccggaccaaggtctac
gaagcgatcgtcaagggtgacgatacgttcgaggccggcattccggagagcttcaatgtg
cttgtgaaggaaatgcgcagcctcggcctcaatgtcgaactgtcctcgctcaccgatgag
gaagatggcgacgaatggccggaggcggcggaataa
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