Caenibius sp. WL: K5X80_06225
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Entry
K5X80_06225 CDS
T08345
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
caen
Caenibius sp. WL
Pathway
caen03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
caen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K5X80_06225 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caen03021
]
K5X80_06225 (rpoC)
03400 DNA repair and recombination proteins [BR:
caen03400
]
K5X80_06225 (rpoC)
Enzymes [BR:
caen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K5X80_06225 (rpoC)
Transcription machinery [BR:
caen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K5X80_06225 (rpoC)
DNA repair and recombination proteins [BR:
caen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K5X80_06225 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Phage_cement_4
Motif
Other DBs
NCBI-ProteinID:
QZP09345
LinkDB
All DBs
Position
1349634..1353935
Genome browser
AA seq
1433 aa
AA seq
DB search
MNDLTKFTNQLAKPETFDQIQIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKYQLLTEDELLDAQDEYGEDAFSAG
IGAEAVKHMLMDLDLEQERVDLLKELEETKSTLKPKKIIKRLKVVESFIDSGNRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMDRDGEPGEGMILADMAEVHQALHV
GAVTLHSKIVSRVPQTGEDGVERMVRYETTPGRMLIGECLPKSHKVPFDVVNRLLTKKDV
GDVIDEVYRHTGQKDTVLFADAIMALGFRNAFKAGISFGKDDMIIPDSKVELVDQTKALV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVAAAMMDEIKATPKDPETGRLAPINSIYM
MSHSGARGSPAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCVIVETDCKTQNALEMRAIVQGGSTIASLGERILGRTT
AEDLINAKTGEVIVEAGTLLDEAMVKAIEEAEVQSAKIRSPLVCEAEQGVCGTCYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQVNETSHLEAISDGKIEYRDMPT
IKDKRGRLLSLARNGEMAVIDAEGREREIHKVPYGTTLMFADGALVKAGDRLAEWDPFSL
PIITEQSGVVKFQDLAEGKTMEERVDEATGIAQRVVTEYRSAGRAKKEDLRPRLTLLNEA
SDETEAARYMLAPGTSLSVEDGQQVEAGDILARASREAAKTRDITGGLPRVAELFEARKP
KDNAIIAKVSGRVEFVRDYKAKRKIAIIPEEGEPVEYLIPKSKVIDVQEGDYVKRGDQLV
AGSPDPHDILEVLGVEALAEYLVAEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITASGD
TTLLPGEQVDLEEMNEINAKLTKGQQPAQGNPVLLGITKASLQTRSFISAASFQETTRVL
TQAAVEGKKDSLIGLKENVIVGRLIPAGTGAAMNRVRVAASSRDAALRAQYRKLQESLIA
PETAAEEHAAELAQGPEAAMGDDPLATVEGETHGTDADAGEYLVKDEDGGSED
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacctgaccaaattcaccaaccagctcgcgaagccggaaactttcgatcagatt
cagatcggcatcgcttcgcccgagcgtatccgctcctggtccttcggcgagatcaagaag
ccggaaacgatcaactaccgcacgttcaagccggaacgcgacggcctgttctgcgcccgc
atcttcggccccgtgaaggattacgaatgcctttgcggcaagtacaagcggatgaagtac
aagggcgtcgtctgcgaaaagtgcggcgtcgaagtgaccgtgaccaaggtccgccgcgaa
cgcatgggccatatcgaactggccgcgccggtcgcgcacatctggttcctcaagtcactg
cccagccgcatcggcctgctgctcgacatgcagctcaagcagcttgagcgcgtgctgtac
ttcgaaagctacatcgtcaccgaaccgggcctgaccccgctggagaagtatcagcttctc
accgaagacgaactgctcgacgcgcaggacgaatacggcgaagacgcgttctccgccgga
atcggcgccgaagccgtcaagcacatgctgatggatctggacctcgaacaggaacgcgtg
gacctgctcaaggaactggaagaaaccaagtcgacgctcaagccgaagaagatcatcaag
cggctcaaggtcgtggaaagcttcatcgattccggcaaccgcccggaatggatgattctc
gaagtgatcccggtcattccgccggaactgcgtccgctggttccgctcgatggcggccgc
ttcgcgacgtcggacctcaacgacctctaccgccgcgtgatcaaccgcaacaaccgcctc
aagcggctgatggaactgcgcgcgccggacatcatcgtgcgcaacgaaaagcgcatgttg
caggaagcggtcgatgcgctgttcgataacggtcgccgcggccgggtcatcaccggcgcc
aacaagcgcccgctcaagtcgctgtccgatatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtgaccggtccg
gaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgaactgttcaagccg
ttcatctacgcccgtctcgacgccaagggtctgtcgatgactctcaagcaggcgaagaag
tgggtcgagaaggaacgcaaggaagtctgggacatcctcgacgaagtgatccgtgagcac
ccggttctgctgaaccgcgcgcccacgctgcaccgtctgggcatccaggcgttcgagccg
gtgctgatcgaaggtaaggcgatccagcttcatccgctggtctgctcggccttcaacgcc
gacttcgacggcgaccagatggccgtccacgtgccgctttcgctggaagcccagctcgaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagccgatc
atcgtgccttcgcaggacatggtgctggggctctattacctgtcgatggaccgcgatggc
gaaccgggcgaaggcatgatcttggccgacatggccgaagtgcatcaggcgctgcatgtc
ggcgcggtgacgctgcactccaagatcgtcagccgcgttccgcagacgggcgaagatggc
gtggaacggatggttcgctatgaaaccaccccgggccgcatgctcatcggcgaatgcctg
cccaagagccacaaggtgccgttcgacgtggtcaaccgcctgctgaccaagaaggacgtg
ggcgacgtgatcgacgaagtctatcgccacaccggccagaaggacacggtgctgttcgcc
gacgcgatcatggcgctcggcttccgcaacgcgttcaaggcgggtatctcgttcggcaag
gatgacatgatcatccccgacagcaaggtggaactggtcgatcagaccaaggcgctggtt
gccgattacgagcagcagtatcaggacggtctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggagccgttgcggcgatcaggtggccgcggccatgatggacgagatc
aaggcgacgccgaaggacccggaaacgggccgtctggcgccgatcaactcgatctacatg
atgagccactccggcgcccgtggtagcccggcgcagatgaagcagcttgccgggatgcgc
ggcctgatggccaagccgagcggcgaaatcatcgaaacgccgatcatctcgaacttcaag
gaaggcctgaccgttcttgaatacttcaactccacgcacggcgcccgcaagggtctggcc
gacaccgcgctcaaaacggcgaactcgggttatctgacccgccgtctggtcgacgtgtcg
caggactgcgtcatcgtggaaacggactgcaagacgcagaacgcgctggaaatgcgtgcg
atcgtgcagggcggttcgacgatcgcctcgctcggcgaacgtatcctgggccgcaccacg
gccgaggacctcatcaacgccaagaccggcgaagtgatcgtggaagcgggcacgctgctc
gacgaagcgatggtcaaggcgatcgaggaagccgaagtgcagtcggccaagatccgcagc
ccgctggtctgcgaagccgaacagggcgtttgcggcacctgctacggccgtgacctcgca
cgaggtacgccggtgaacatcggtgaggctgtcggcgtgatcgcggcgcagtcgatcggt
gaaccgggcacgcagctgaccatgcggaccttccacatcggcggcgcggcgcaggtgaac
gaaacctcgcatctcgaagcgatttcggacggcaagatcgaataccgcgacatgcccacc
atcaaggacaagcgcggccgcctgctgtcgctcgcccgcaacggtgaaatggcggtgatc
gatgccgaagggcgcgaacgcgaaatccacaaggtgccttacgggaccacgctgatgttc
gccgatggcgcgctggtgaaggcgggcgaccgtctggccgagtgggacccgttctcgctg
ccgatcatcaccgaacagtcgggcgtggtgaagttccaggatctggccgaaggcaagacg
atggaagaacgcgtcgacgaagcgacgggtatcgcccagcgcgtcgtcaccgaataccgt
tcggcgggccgggccaagaaggaagacctgcgtccgcgcctcacgctgctcaacgaagcg
tcggacgagacggaagccgcgcgctacatgctggcgccgggtacgtcgctctcggtcgag
gatggtcagcaggtcgaagcgggcgacattctcgcccgtgcgtcgcgcgaagcggccaag
acccgcgacatcaccggcggtctgccgcgcgtggccgaactgttcgaagcccgcaagccg
aaggacaatgcgatcattgccaaggtttccggccgcgtcgaattcgttcgcgattacaag
gccaagcgcaagatcgcgatcattccggaggaaggggaaccggtggaatacctgatcccc
aaatcgaaggtgatcgacgtccaggaaggcgactatgtgaagcgcggcgaccagctcgtg
gccggttcgcccgatccgcatgacattctggaagtgctcggcgtggaagcgctggccgaa
taccttgtggcggaaatccaggaagtctatcgcttgcagggcgtgaagatcaacgacaag
cacatcgaggtgatcgttcgccagatgctgcaaaaggtcgagatcacggccagcggcgac
accacgctgctgccgggcgaacaggtcgatctggaagaaatgaacgaaatcaacgccaag
ctgaccaagggccagcaaccggcgcagggcaacccggtgctgctgggcatcaccaaggcg
agcctgcagacccgttcgttcatttccgccgcctccttccaggaaaccacccgcgtgctc
acgcaggcggcggtcgaagggaagaaggattcgctgatcgggctgaaggaaaacgtcatc
gtcggtcgcctcatccccgccgggaccggcgcggcgatgaaccgtgtccgcgtggccgcc
tccagccgcgatgccgcgctgcgcgcgcagtatcgcaagctgcaggaatcgctcatcgcc
ccggaaacggcggcggaagagcatgcggccgaactggcgcagggcccggaagcggccatg
ggtgacgatccgctggcgacggtcgaaggggaaacccacggcaccgacgccgatgcgggc
gaatacctcgtcaaggatgaggatggcggcagcgaagactaa
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integrated database retrieval system
