Caenibius sp. WL: K5X80_08270
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Entry
K5X80_08270 CDS
T08345
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
caen
Caenibius sp. WL
Pathway
caen03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
caen00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K5X80_08270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caen03021
]
K5X80_08270
03400 DNA repair and recombination proteins [BR:
caen03400
]
K5X80_08270
Enzymes [BR:
caen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K5X80_08270
Transcription machinery [BR:
caen03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K5X80_08270
DNA repair and recombination proteins [BR:
caen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K5X80_08270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
DUF211
Phage_tube_2
IDH
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
QZP06727
LinkDB
All DBs
Position
1754608..1755666
Genome browser
AA seq
352 aa
AA seq
DB search
MSVNIKNWQELKKPNSLDIKPGGDGKRKATFVAEPLERGFGLTLGNALRRVLLSSLQGAA
ITSVKIENVLHEFSSLAGVREDVTDIVLNIKQIALKMEGEGAKRLQLSATGPAEVKAGDI
AVSGDIEVMNKDLVICRLDEGATLNMELTADTGKGYVPAVQNRPADAPVGLIPVDSLYSP
VRQVSYKVENARVGQELDYDKLSLTVETDGTVTPEDAVAYAARILQDQLALFVHFEDAIP
QGPTAVIGGVAVAPEESDANQLNRYLLKKVDELELSVRSANCLKNDNIIYIGDLVQKTEA
EMLRTPNFGRKSLNEIKEVLSSMGLRLGMDIPGWPPENIEEMAKKLEQELLG
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtcaatatcaagaactggcaggaactgaagaagcccaacagccttgacatcaag
cccggcggtgacggcaagcgcaaggcgactttcgtcgcggagcctctcgaacgtggtttt
ggtctgacgctcggcaatgcgctgcgccgtgtgctgctctcgtcgctccagggtgcggcg
atcacctcggtcaagatcgaaaacgtgctgcacgagttctcgtcgctcgcgggcgtgcgt
gaagacgtgaccgacatcgtgctcaatatcaaacagatcgcgctgaagatggaaggcgaa
ggcgccaagcgtctccagctgtccgccacggggccggccgaagtgaaggccggcgatatt
gccgtttcgggcgatatcgaagtgatgaacaaggatctcgtgatctgccgcctcgacgaa
ggcgcgacgctgaacatggaactgaccgccgacaccggcaagggctacgttccggcggtg
cagaaccgcccggccgatgcgccggtcggcctgatcccggtcgattcgctctattcgccg
gttcgccaggtcagctacaaggtcgagaacgcccgcgtcggccaggaactggactacgac
aagctttcgctgaccgtggaaaccgacggcaccgtgacgccggaagatgcggtggcctat
gccgcgcgcatcctgcaggaccagctcgcgctgttcgtacatttcgaagacgcgatcccg
cagggcccgactgccgtcatcggcggcgtggccgttgctccggaagaaagcgacgccaat
cagctcaaccgttacctgctcaagaaggtggacgaactggaactgtcggtgcgttcggcc
aactgcctcaagaacgacaacatcatctacatcggcgatctggtccagaagaccgaagcc
gagatgctgcgcacgccgaacttcggccgcaagtcgctcaacgagatcaaggaagtcctt
tcctcgatggggctgcgcctcggcatggatatccctggctggccgccggaaaacatcgaa
gaaatggccaagaagctcgaacaggaacttctcggctaa
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