Caenibius sp. WL: K5X80_13935
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Entry
K5X80_13935 CDS
T08345
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
caen
Caenibius sp. WL
Pathway
caen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K5X80_13935 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caen03019
]
K5X80_13935 (pnp)
03016 Transfer RNA biogenesis [BR:
caen03016
]
K5X80_13935 (pnp)
Enzymes [BR:
caen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
K5X80_13935 (pnp)
Messenger RNA biogenesis [BR:
caen03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K5X80_13935 (pnp)
Transfer RNA biogenesis [BR:
caen03016
]
Prokaryotic type
tRNA degradation factors
K5X80_13935 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
S1_2
Motif
Other DBs
NCBI-ProteinID:
QZP07735
LinkDB
All DBs
Position
complement(2920393..2922690)
Genome browser
AA seq
765 aa
AA seq
DB search
MFDVKTVSLEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKFSAAGRIPGGFFKRERGATEKETLTSRLIDRPVRPLFPEGFYNEINVIAQVMSY
DGETEPDIVAMIAASAALTISGVPFMGPIGAARVGFKDGEYQLNPSLAEVAEGRLDLVVA
ATQDAVMMVESEAKELTEDEMLGAVVFAHEESRKVIGAIIELAEKAAKDPWNIDLSDNTA
DLKADIKKLIGKDIAAAYKETNKSKRSDALNAARDKVKAKFADADGQTLMTAIKLTKKLE
AEIVRTAILKDGQRIDGRTTTQVRPIEAMVGFLPRTHGSALFTRGETQAICTTTLGTKDS
EQMIDGLDGLSYSRFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPVLPSKEDF
PYTIRVLSDITESNGSSSMATVCGGCLSMMDAGVPIERPVSGIAMGLILEGDEFTVLSDI
LGDEDHLGDMDFKVAGTEAGITSLQMDIKVAGITEAIMKQALAQAKEGRAHILGEMTKAL
GSARTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGVIKISSSD
VNQIEAAKKWIQGIVEEAEVGKIYNGKVVNIVDFGAFVNFMGGKDGLVHVSEMRNERVEK
PTDVVKEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEELEDTRPPREPREPRGDRGDRGD
RRPRRDGDRGGRGGPRGDRGPRRDRGEGKEDGNPDHMPAFLKSDD
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatgtgaaaaccgtatcgctggaatggggcggaaaaaccctcactctggaaacc
ggccgtattgcccgccaggctgatggcgcggttctggccacttatggcgaaaccgtggtg
ctctgcgccgtgacggccgccaagtcggtgaaggaagggcaggacttcttcccgctcacc
gttcactaccaggaaaaattctccgctgccgggcgtattccgggcggcttcttcaagcgc
gaacgcggcgcgacggaaaaggaaacgctgaccagccgcctgatcgaccgtccggtgcgc
ccgctgttccctgaaggcttctacaacgaaatcaacgtcatcgcccaggtgatgagctat
gacggcgaaaccgagcccgatatcgtcgcgatgatcgcggcttcggcggcgctcaccatc
tcgggcgttcccttcatgggcccgatcggcgccgcgcgcgtcggtttcaaggatggcgaa
taccagctcaacccgtcgctggccgaagtggccgaaggccgcctcgatctcgtcgtcgcc
gccacgcaggacgcggtgatgatggtcgaatccgaagccaaggaattgaccgaagacgaa
atgctcggcgcggtcgtcttcgctcacgaagaatcgcgcaaggttatcggcgcgatcatc
gaactggcggaaaaggccgccaaggatccctggaacatcgacctgtcggacaacaccgcc
gacctcaaggccgatatcaaaaagctgatcggcaaggatatcgccgcagcttacaaggaa
accaacaagtcgaagcgttcggacgcgctcaatgccgcgcgcgacaaggtgaaagcgaaa
ttcgccgacgccgatggccagacgctgatgaccgcgatcaagctgaccaagaagctggaa
gcggaaatcgtccgcacggcgatcctcaaggatggccagcgtatcgacggccgcaccacc
acgcaggtccgcccgatcgaagcgatggtcggcttcctgccgcgcacgcacggttcggcg
ctgttcacccgcggcgaaacgcaggcgatctgcaccaccacgctcggcaccaaggattcc
gagcagatgatcgacggcctcgatggcctgagctactcgcgcttcatgctgcactacaac
ttcccgccctattcggtcggtgaagtcggccgcttcggcgcgccgggccgccgtgaagtc
ggccatggcaagctggcatggcgtgcgctgcaccccgtgctgccgagcaaggaagatttc
ccctacacgatccgcgtgctgtccgatatcaccgaatcgaacggttcgtcctcgatggcg
accgtgtgcgggggctgtctctcgatgatggatgcgggcgttcccatcgaacgtccggtt
tccggcatcgccatgggcctgatcctcgaaggtgacgaattcaccgtgctgtccgacatc
cttggtgatgaagatcacctgggcgacatggacttcaaggtggccgggaccgaagcgggc
atcaccagcctgcagatggacatcaaggttgccgggatcaccgaagcgatcatgaagcag
gcgctggcgcaggccaaggaaggccgtgcgcatatcctgggcgagatgaccaaggcgctg
ggttcagcccgcaccgaattgtcggcccatgccccgcgcatcgaaacgatccagatcgac
aagtcgaagatccgtgacgtgatcggcacgggcggcaaggtgatccgtgagatcgtcgct
gaaaccggtgccaaggtcgatatcgacgatgaaggcgtgatcaagatcagctcgtccgac
gtcaaccagatcgaagccgccaagaagtggattcagggcatcgtcgaggaagctgaagtc
ggcaagatctacaacggcaaagtcgtcaacatcgtcgatttcggcgctttcgtgaacttc
atgggcggcaaggacggcctcgtccatgtgtccgaaatgcggaacgaacgcgtcgaaaag
ccgacggacgttgtcaaggaaggccaggaagtcaaagtcaaggttctcgaaatcgacaac
cgtggcaaggtccgcctgtcgatgcgcgtggtcgatcaggaaaccggcgaagagctggaa
gacacccgtccgccgcgcgaaccgcgtgaaccgcgcggtgatcgtggcgaccgcggcgat
cgtcgtccgcgccgtgacggcgaccgtggcggtcgtggtggcccccgcggcgatcgtggc
ccgcgtcgcgatcgtggtgaaggcaaggaagacggcaaccccgatcatatgccggctttc
ctcaagtctgacgactga
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