Collinsella aerofaciens: CSV91_03205
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Entry
CSV91_03205 CDS
T05143
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
caer
Collinsella aerofaciens
Pathway
caer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSV91_03205 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caer03019
]
CSV91_03205 (rny)
Messenger RNA biogenesis [BR:
caer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CSV91_03205 (rny)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_PNO1_2nd
HDOD
Propep_M14
KH_NusA_2nd
DUF2613
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ATP53627
LinkDB
All DBs
Position
complement(718190..719740)
Genome browser
AA seq
516 aa
AA seq
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MPIIAALVGIVLGAIAAIAYMRTAKQGSLHEADEKIQSAHAQAESLIGDAKRQAETLKKE
ALLEAKEEIIKNKQAAEAEDKQRKNEIRTLENRVMQREESLDRRNDALDKREHQLSSQAG
QVEKRSRELEELCAKQTSELERIADLTREDAHKELLDKVRGEVTHEAATIIRESEQQVRA
ECHKTAQEILSLAIQRCAADHTAEVTVTSVHIPSDDLKGRIIGREGRNIRTFEQVSGVNL
VIDDTPETVVLSSFDPVRRETARVALENLIADGRIHPARIEEMYHKAADLVQQRVREAGE
QAAFDTGIHDLHPEIVKTLGALRYRTSFGQNVLQHSLEVSDLCGVMASELGLDVVTAKRA
GLLHDLGKAIDHDVEGPHAVIGAELARRYGEKPVIVHAIEAHHADVDPNTVLDVLVQAAD
AVSASRPGARRESAENYIKRLEKLEEIANSHDGVERTYAMQAGREVHVMVQPDKISDAQS
TVLAHDIAHQIEEEMEYPGQVRVVVIRESRAVDIAK
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgcctatcatcgcagcgctcgttggcatcgttttgggtgccatcgccgccattgcctac
atgcgcaccgccaagcagggtagtcttcacgaggccgacgaaaaaatccagtcggcacac
gcacaggctgagtccctgatcggtgatgccaagcgtcaggccgagaccctcaaaaaagag
gctctgctcgaggctaaagaggagatcatcaagaacaagcaggccgccgaggccgaggac
aagcagcgtaagaacgagattcgtacgctcgagaaccgcgtgatgcagcgcgaggaatcc
ctcgatcgccgcaacgacgctctcgacaagcgcgagcatcagctgtccagccaggccggt
caggtcgagaagcgctcccgtgagctcgaggagctctgtgcaaagcagacctccgagctc
gagcgcatcgccgaccttacccgcgaggacgcccacaaggagctcctcgataaggttcgc
ggcgaggtcacccacgaggccgccacgatcatccgcgagtccgaacagcaggttcgcgcc
gagtgccacaagaccgcccaggagattctgtctctggcgattcagcgctgcgctgccgac
cacactgccgaggtcaccgttacctccgtgcacattccctctgatgacctcaagggccgt
atcatcggtcgcgagggtcgcaacatccggaccttcgagcaggtttccggcgtcaacctc
gtgatcgacgacacgcccgagaccgtcgttctttcgagcttcgacccggtccgtcgtgag
accgcccgtgtcgccctcgagaacctcatcgccgacggccgcattcaccccgcccgcatc
gaggagatgtatcacaaggctgccgatctggtccagcagcgcgtgcgcgaggctggcgag
caggctgccttcgataccggcatccacgacctgcaccccgagatcgtcaagacccttggt
gccctgcgctaccgtacctcgtttggtcagaacgtgcttcaacactcccttgaggtctct
gatctgtgcggcgtgatggcttccgagcttggcctggacgttgtgaccgccaagcgcgcc
ggcctgctgcacgacctgggcaaggcaatcgaccatgacgtcgagggcccgcatgccgtc
atcggcgccgagctggcccgccgttatggcgagaagcccgttatcgtccacgctatcgag
gctcaccatgccgatgtcgaccccaacacggtgctcgatgtcctggtacaggccgccgat
gctgtctctgcctctcgccccggtgcccgtcgcgagtctgccgagaactacatcaagcgt
cttgagaagcttgaggagatcgccaactcccatgacggcgtcgagcgcacctatgccatg
caggctggtcgcgaggtccacgtcatggttcagccggacaagatctccgatgcccagtcc
acggttctggctcacgatatcgcccatcagatcgaggaagagatggagtatcccggtcag
gtgcgcgttgtcgtgattcgcgagagccgcgctgtcgatatcgctaaataa
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