Collinsella aerofaciens: CSV91_03960
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Entry
CSV91_03960 CDS
T05143
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
caer
Collinsella aerofaciens
Pathway
caer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSV91_03960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caer03021
]
CSV91_03960
03019 Messenger RNA biogenesis [BR:
caer03019
]
CSV91_03960
Transcription machinery [BR:
caer03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CSV91_03960
Messenger RNA biogenesis [BR:
caer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CSV91_03960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
SAP
Spore_III_AA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ATP53759
UniProt:
A0A2D1TWL4
LinkDB
All DBs
Position
complement(890836..893328)
Genome browser
AA seq
830 aa
AA seq
DB search
MSDQVAAPAQTSTPETPKAATAEKAVPATVEEAAPAKPKRTRRTAKPAADGEEVTKPKRR
TTRTTRAKRTVAADSSAPISDEVAQARALAQISEAQVVRARRRAAEREAAALTELAAPSV
PETPAAIETPAADLPTEKPAPRTRRRTAAKAEQVAEQVAPELTEASVRSAAGEGTSPVEP
AAPVEASEVPVVDPALRPHRRGRKPKAFVEAEKAAAAAAAARDAAATAESATAADAPVQD
ATTSEAAPADVEPADVRPSRSRRTAAKRTSKAKAAKKGVSEDSAETNADASTDAAEPQDV
EQPASEKPKRGRKKSVKAKAAEQQADVEAQVDSGAEANDAAAANVDTAATDGAAHAEGED
GARPNRRQHKRNEERNERKDERNNDRRNRQRDRKQRNKERNAAPTEPTLSREELAAMKVA
ELREKAKEFEIETTGKKKAELVEEIYVTAAKAEGFRDIKGILQIRPDSSGIIHAHGYMKS
NDDAFVPAYLIRSARLRTGDVIEGSLRPSRGGDKRAGLAKITTVNGLDPEQIRNRPKFGD
LTPVYPNEPLRMEHGKDSITGRAIDIVSPIGKGQRGLIVSPPKAGKTTILKKICQSISIN
NPEVHLICLLVDERPEEVTDMQRSIKGEVVASTFDMPADNHTRVAELVIERAKRIVELGG
DVVVVLDSITRLARAYNLAAPASGRILSGGVDSAALYPPKRFLGAARNIENGGSLTILAS
ALIDTGSKMDEVIFEEFKGTGNMELKLDRDLADRRIFPAIDPVASGTRNEDLLVDEQMRP
FVFGLRRILAGMNNTERAAASFIKGLKGTNTNQEFLVRSAKKHSDYEQTF
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
gtgtcggaccaggtcgcggcgcccgcgcaaacctcgactcctgagacgcctaaggctgca
acggctgagaaggccgtgcctgcaactgttgaggaggctgctccggcaaagcccaagcgt
acgcgccgcacggccaagcctgctgctgacggcgaggaggtcaccaagcccaagcgccgt
accacgcgcacgacgcgcgccaagcgcaccgttgcagctgactcctcggcgccgatttcc
gatgaggtcgcgcaggcacgtgcgttggcgcagattagcgaggctcaggtggtgcgcgcc
cgccgtcgtgctgccgagcgcgaggccgcggctctgaccgagcttgcagctccgtctgtg
cccgagacgcctgccgccatcgagacccctgccgccgacctgccgaccgagaagccggca
ccgcgcacacgccgccgcacggctgctaaggccgagcaggttgcggaacaggtagccccc
gagctcactgaggcttcggtccgttccgcggcaggggagggcacatcgcctgttgagccc
gctgcgcctgtcgaggccagcgaagttcccgttgtcgatccggctttgcgcccgcatcgt
cgcggtcgcaagcccaaggccttcgtcgaggcagagaaggccgcagccgcagctgcagcc
gctcgggatgctgcggcgaccgccgagtctgcaaccgccgccgacgcgcccgtccaggat
gctacgacttccgaggccgctcccgccgatgtcgagcccgccgacgtccgtcccagtcgc
agccgtcgcactgctgctaagcgcacgtccaaggctaaggctgccaagaagggtgtgtcc
gaggattccgccgagacgaacgccgatgcatcgactgatgccgccgagccccaggacgtc
gaacagcctgcatccgagaagcccaagcgcggtcgcaagaagtccgttaaggccaaggcc
gccgagcagcaggctgatgtcgaagcgcaggttgattctggcgccgaggccaatgacgcc
gctgcggccaatgttgacaccgccgcaaccgatggtgccgcccacgccgagggcgaagac
ggcgctcgccccaaccgtcgccagcacaagcgcaacgaggagcgcaacgagcgcaaggac
gagcgcaacaacgaccgtcgcaaccgccagcgcgatcgcaagcaacgcaacaaggagcgt
aatgccgctcccaccgagcccacgctttcgcgcgaggagctcgctgccatgaaggtcgcc
gaacttcgcgagaaggccaaggagttcgagatcgagacgaccggcaagaagaaagccgag
ctcgtcgaggagatctacgtcaccgccgcgaaagccgagggcttccgcgatatcaagggc
attctgcagattcgcccggacagctccggcatcatccatgcccatggctacatgaagtcc
aacgacgacgccttcgtgcccgcctacctcatccgctccgcgcgcctgcgcacgggtgac
gtcatcgagggctcgctgcgtccttcgcgcggtggcgacaagcgcgccggcctcgccaaa
atcacgaccgtcaacggtctggaccccgagcagattcgcaaccgccccaagttcggcgac
ctcaccccggtctatcccaacgagccgctgcgcatggagcacggcaaggactctattacc
ggtcgcgccatcgacatcgtttcaccgatcggcaagggccagcgcggcctgatcgtgtcc
ccgcccaaggccggcaagaccacgatcctcaagaagatctgccagtctatctcgattaac
aaccccgaggtgcacctcatctgcctgctcgtcgacgagcgccccgaagaggtcaccgat
atgcagcgttccatcaagggcgaggttgtggcgtcgaccttcgatatgcctgccgacaac
cacacccgcgtggcagagctcgtcatcgagcgcgccaagcgcatcgtagagctgggtggc
gacgtcgtggtggtgctcgactccatcacgcgcctcgcccgcgcctacaacttggcggcg
cccgcctcgggccgcatcctttcgggcggcgtcgattcggcggcactgtatccgcccaag
cgcttcctgggtgcagcccgcaatatcgagaacggtggctcgctcaccatcctggcctct
gccctcatcgacaccggttccaagatggacgaggtcatttttgaggagttcaagggcacc
ggcaacatggagcttaagctcgaccgcgacctggccgaccgccgcatcttcccggctatc
gaccccgttgcctccggtacacgtaacgaggacctgttggtcgacgagcagatgcgcccg
tttgtctttggtctgcgtcgcattcttgccggcatgaacaacaccgagcgcgcagccgca
tcgtttatcaagggtcttaagggcaccaacaccaaccaggagttcctggtgcgttcggcc
aaaaaacacagtgattacgagcagacgttctag
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