Collinsella aerofaciens: CSV91_04960
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Entry
CSV91_04960 CDS
T05143
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
caer
Collinsella aerofaciens
Pathway
caer03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
caer00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CSV91_04960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caer03021
]
CSV91_04960
03400 DNA repair and recombination proteins [BR:
caer03400
]
CSV91_04960
Enzymes [BR:
caer01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CSV91_04960
Transcription machinery [BR:
caer03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CSV91_04960
DNA repair and recombination proteins [BR:
caer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CSV91_04960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
AMIN-like
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
ATP53941
UniProt:
A0A173ZTF6
LinkDB
All DBs
Position
complement(1140019..1140960)
Genome browser
AA seq
313 aa
AA seq
DB search
MSEFIRPQVQVEEINETSARVSVEPLERGYGDTLGNSLRRVLLSSLEGAAVEAIQIDGAQ
HEFMTIPNMVEDVTDIVLNVKGLVFRALGTTDEATATISVDGPCEVTGADFFIPSEFELV
NPEQHIATLTEGGHLTMSMRIGYGRGYVSGEANKRDNDPIGVIHVDSLYSPVSRCAKLVE
ACRVGQHTDYDRLVLEIETNGSIAPRDAVVQAANIINQHMAAFMNLAETPEVEEEASIFA
PEVTNDNAELDKQIEDLDLSVRSYNCLKRASIHSVRQLVEFSENDLLNIRNFGVKSIEEV
KDKLESMGLSLKA
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaattcattaggcctcaggttcaggtcgaagagatcaacgagacgtctgctcgt
gtctccgtcgagccgctcgagcgtggttacggcgatacgctgggtaactcccttcgtcgc
gttcttctgtcctcgctcgagggtgccgccgtcgaggctattcagatcgatggtgcgcag
cacgagttcatgaccatccctaacatggtcgaggatgtcaccgacatcgtcctgaatgtc
aagggtcttgtcttcagggctctcggcacgaccgacgaggcgaccgccaccatctcggtt
gacggcccctgcgaggtcaccggtgcggacttctttattccgtccgagtttgagctggtc
aaccccgagcagcacattgctacgctcaccgagggtggccatctcaccatgagcatgcgc
atcggctatggccgcggctatgtctctggcgaggctaacaagcgcgataacgatcccatc
ggtgtgatccacgtcgactcgctgtactcgccggtttcccgttgcgccaagctcgttgag
gcttgccgtgtcggtcagcacaccgactacgaccgccttgtcctcgagatcgagaccaac
ggctccatcgccccgcgcgacgccgtggtccaggctgccaatatcatcaaccagcatatg
gccgcctttatgaaccttgccgagacccccgaggtcgaggaggaggcttcgatcttcgct
cccgaggtcaccaacgacaacgccgagctggacaagcagatcgaggatctggacctttcc
gtccgttcctacaactgccttaagcgcgccagcattcactcggtccgtcagctcgttgag
ttctcggagaacgatctgctcaacatccgtaacttcggtgttaagtcgatcgaggaagtg
aaggacaagcttgagtccatgggcctgagcctgaaggcttaa
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