Collinsella aerofaciens: CSV91_08840
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Entry
CSV91_08840 CDS
T05143
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
caer
Collinsella aerofaciens
Pathway
caer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CSV91_08840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caer03019
]
CSV91_08840
03400 DNA repair and recombination proteins [BR:
caer03400
]
CSV91_08840
Enzymes [BR:
caer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CSV91_08840
Messenger RNA biogenesis [BR:
caer03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CSV91_08840
DNA repair and recombination proteins [BR:
caer03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CSV91_08840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RQC
RecQ_Zn_bind
HHH
Helicase_Sgs1
ResIII
AAA-ATPase_like
Motif
Other DBs
NCBI-ProteinID:
ATP54627
UniProt:
A0A2D1TZ41
LinkDB
All DBs
Position
2040532..2042511
Genome browser
AA seq
659 aa
AA seq
DB search
MTDSMQQMALDTLGAYFGYTSFRPGQDRMVDAILAGRDALGVMPTGAGKSICYQVPALML
PGITFVVSPLLSLMEDQTRALLAAGARPSYLNSSLTPAQQNTVLKRAREGRYQLMYVAPE
RLLEPRFLAFAQEAAADGGIGVPLVAIDEAHCVSQWGQDFRPAYLQIREFIDSLPRRPIV
AAFTATATERVRADIQQMLGLQNPATVVTGFDRKNLYFGCEEMGDKAKTAWVRDYVIAHS
SESGIVYCSTRKTVDALAAELAEALGPSGIRVGRYHAGMGNDARRQSQRAFIDDDIQVMV
ATNAFGMGIDKPNVRYVIHNNVPESIEAYYQEAGRAGRDGDPASCHLLWNGNDFRMRRFL
IDRGDAADEALDDEQRAWALQNRYRLLSQMEGYCNTTGCLREYMLRYFGDEAAAEHAVVA
AAGGTADDAEGCGNCSNCLTQFEVEDVTDMARAAVRYVATRPMRFGKSLIADVLHGGNTE
RIRQMHLDEDRGYGELSSESVGRIKDIIGQLCGRGYLATSQGQYPVVGLGPRATEVEDEA
FAFTVKRRASKRKVSARARRAVDLLREEAELDQRPRVGDDAELFERLRALRKEISAELEM
APYMVFSDKALRGLCRLRPQTRDELIQVNGIGEKKADAFGEQFMAAIEEFESEHARDGA
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatagcatgcagcagatggcgctcgacacgctcggcgcctattttggctacacc
tcgtttcgcccggggcaggaccgcatggtggatgcgattcttgctggccgcgatgcgctc
ggcgttatgcccacaggcgccggcaagtctatctgctaccaggtccccgcgctcatgctg
cccggcatcacctttgtggtgagcccgttgctgtcgcttatggaggaccagacccgcgcg
ctgctcgcggcgggtgcgcgccccagttatctcaactccagccttacgccggctcagcaa
aataccgtgctcaagcgggcgcgcgagggccgctatcagcttatgtacgtggcacccgag
cgtctgctcgagccgcgctttttagcctttgcgcaggaagccgcggcggacggtggcatt
ggcgtgccgctcgtggccattgacgaggcccactgcgtgagccagtggggccaggatttt
cgtcccgcctacctgcagattcgtgagtttatcgattcgctgccgcggcgccccatcgtg
gcggcctttaccgccacggcgaccgagcgtgtacgcgccgatatccagcaaatgctcggc
ctgcaaaacccggcgaccgtggtgacgggcttcgatcgcaagaacctctactttggttgc
gaagagatgggcgacaaggccaagaccgcgtgggtgcgcgactatgtgatcgcgcattcg
agcgagagcggcatcgtgtattgctcgacccgcaagacggtcgacgcgctggccgcggag
cttgccgaggcactgggccccagcggcattcgcgttggccgctaccatgccggcatgggc
aacgacgcccgccgccagagccagcgtgcctttatcgacgacgacattcaggtgatggtt
gccaccaacgcctttggcatgggcatcgacaagcccaacgtgcgctatgtgattcacaac
aacgtgcccgagagcatcgaggcctactaccaggaggctggccgcgccggccgcgatggc
gacccggccagctgccacctgctgtggaacggcaacgattttcgcatgcgtcgctttttg
atcgaccgcggcgatgctgccgacgaggcgctcgacgacgagcagcgcgcgtgggcactc
cagaaccgttatcgcctgctcagccagatggagggctactgcaataccaccggctgcctg
cgcgaatacatgctgcgctactttggcgacgaagccgcggccgagcatgcggttgtggct
gctgcgggcggcaccgcagacgacgccgagggctgcggcaactgcagcaattgcctcacg
cagttcgaggtcgaggatgtcaccgatatggcccgcgccgccgtgcgctatgtggctacg
cgacccatgcgctttggcaagtcgctcatcgccgatgtgctccacggcggcaacaccgag
cgcattcgccagatgcatctggacgaggaccgcggctacggtgagctgtcgagcgaatcg
gtcgggcgcatcaaggacatcatcggccagctgtgcggccgcggctacctggccacctcg
caggggcagtacccggtcgtggggctgggcccgcgtgccaccgaggtcgaggatgaggcg
tttgcctttaccgttaagcgtcgcgcgtccaagcgcaaggtctctgcccgcgcccgccgt
gcggtggatctgctgcgcgaggaggccgagctggatcaacgcccgcgcgtgggcgacgat
gccgagctgttcgagcgcctgcgtgccctccgcaaggagatctctgcggagctggagatg
gcgccgtatatggtcttttccgacaaggccctgcgcggcctgtgccgcctgcgcccgcag
acgcgcgacgagctgatccaggtcaacggcattggcgagaaaaaggccgacgcctttggc
gagcagtttatggcggcgattgaagagtttgagtccgagcatgcgcgggatggagcgtaa
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