Citrobacter amalonaticus FDAARGOS_165: AL524_00520
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Entry
AL524_00520 CDS
T04738
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
caf
Citrobacter amalonaticus FDAARGOS_165
Brite
KEGG Orthology (KO) [BR:
caf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caf03019
]
AL524_00520
Messenger RNA biogenesis [BR:
caf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AL524_00520
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Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Motif
Other DBs
NCBI-ProteinID:
AMG51696
UniProt:
A0AAP5VKC7
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All DBs
Position
complement(40557..42497)
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AA seq
646 aa
AA seq
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MRLTTKFSAFVTLLTGLTIFVTLIGCSLSFYNAIQYKMAHRVQAVATAIDTHLVSRDFKQ
LTSQIDELMVSADVVRVDLLQGEKVIYSQTRNSSYRPVGTSNLFRELSVPLMKHPGMTMD
LVYQDPMGNYFHSLMTTAPLTLAIGFIVLMLFLSVRWLQRQLSGQELLEMRSTRILNGER
GASVRGTVYEWPARTSSALDMLLSEIQSAQEQRSRLDTLIRSYAAQDTKTGLSNRLFFDN
QLATLLDDQEKIGAHGVVMMIRLPDFNLLRDSWGRNLAEEELFSLINLLSTFMMRFPGSL
LARYHRSDFAVLLPHRTLKEAESVAGQLLKAVDALPTNKMLDRDDMVHIGICAWRSGQST
EQVMEHAEAATRNAVLQGGNSWAVYDDSLPEKGRGNVRWRTLIEQMLSRGGPRIYQKPAV
TRDGHVHHRELMCRIFDGNEEVSTAEYMPMVLQFGLSEEYDRLQISRVIPLLNYWPEENL
AMQVTVESLIRPRFQRWLRDTLMQCEKSQRKRIIIELAEADVGQHISRLQPVIRLVNALG
VRVAVTQAGLTLVSTSWIKELNVELIKLHPSLVRNIEKRTENQLLVQSLVEACSGTSTQV
YATGVRSRGEWQTLTARGVSGGQGDFFAASQPLDTNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaaattctcagcttttgtcacgctgctcaccgggttaacgatcttt
gtcaccctgatcggctgctcgctgagcttttacaacgccatccagtacaagatggcccat
cgtgtccaggcggtggcgacagccattgacacgcatcttgtttcacgcgatttcaaacag
ttaacatcgcaaattgacgaactgatggtgtctgccgacgtcgtacgcgtcgatctgctg
cagggtgaaaaggtcatttatagccaaacccgtaacagtagctatcgcccggttggcacc
agtaatctctttcgcgagctctcggttccgctgatgaagcacccgggaatgacgatggat
ctggtctatcaggatccgatgggcaactattttcattcactgatgacgacggcaccgctc
acgctggccattggttttattgtactgatgctgtttctgtcggtacgttggctacagcgt
caactttccggtcaggaactgctggagatgcgttcgacgcgaattttgaatggagaacgg
ggagccagtgtacggggtacggtctatgaatggccggcgcgcaccagtagcgcgctggat
atgctgttgtccgaaatccagagcgcccaggagcagcggagccgtctcgatacgctgatt
cgctcttacgccgcgcaggacaccaaaaccggcctcagcaatcggctcttttttgacaac
caactggcgacgttgctggacgatcaggagaagatcggcgcgcatggcgtggtgatgatg
attcgcctgccggactttaacctgttgcgtgacagttgggggcgtaacctcgccgaagaa
gaactgtttagtctgatcaatttattgtctacttttatgatgcgttttccggggtcgcta
ctggcgcgctaccatcgcagcgactttgccgttttgctgccgcaccgtactttgaaagag
gcggaaagcgtagccggacaacttttaaaagcagtcgatgcacttccgactaataaaatg
ctcgatcgtgacgatatggtacatatcggcatttgcgcctggcgtagcgggcagtcgact
gaacaggtgatggaacatgcagaggcggcgacccgcaatgctgtgttgcagggcggaaat
agctgggcggtgtatgacgactcgttgccggaaaaagggcgtggcaacgtgcgctggcga
acgctgattgagcagatgctcagccgcggcggcccgcgaatttatcagaaaccggccgtc
actcgggacggacatgtgcatcatcgggaactgatgtgccgcatctttgatggtaatgaa
gaggtcagcacggcggaatacatgccgatggttttacagttcggtttatcagaagagtat
gaccgcttacaaataagccgcgtcattccgctgctaaactactggccggaagagaatctg
gcgatgcaggtgacggtagagtcgctgattcgtccacgttttcagcgttggttacgcgat
accttgatgcagtgtgaaaaatcgcaacgaaaacgcataattattgaacttgcggaggcg
gatgtaggtcaacacatcagccggttgcagcccgttatccgcttagtgaatgcattaggc
gttcgggttgccgtcacgcaggcgggtttaacgctggtgagtaccagctggattaaggaa
ctcaatgtggaattgatcaagcttcatccgagtctggtcaggaacattgagaagcgaacg
gaaaaccagttgctggttcaaagcctggtggaggcgtgctcaggcaccagcacccaggtt
tacgcaacgggtgtacgttcgcgcggtgagtggcagacgctgacagcgcgtggtgtttcc
ggtggacagggggatttttttgctgcctcccagccgctggataccaatgtgaaaaaatat
tctcaaagatactcggtttaa
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