Citrobacter amalonaticus FDAARGOS_165: AL524_07685
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Entry
AL524_07685 CDS
T04738
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
caf
Citrobacter amalonaticus FDAARGOS_165
Pathway
caf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
caf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AL524_07685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caf03400
]
AL524_07685
Enzymes [BR:
caf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AL524_07685
DNA repair and recombination proteins [BR:
caf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AL524_07685
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AVC45189
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All DBs
Position
1586400..1589945
Genome browser
AA seq
1181 aa
AA seq
DB search
MNDVAESLDPLRLPLTGERLIEASAGTGKTFTIAALYLRLLLGLGGSSAFPRPLTVEELL
VVTFTEAATEELRGRIRSNIHELRIACLRESTDNPLYARLLDEIDDKKQAAQWLLLAERQ
MDEAAVFTIHGFCQRMLSLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA
QVVFETWKGPQALLADINRYLQGEAPVIKAPPPDDETLASRHQQIVQRINALKQQWCDAV
GELEGLMEASGIDRRKFNRGNQGKWIEKISAWAQSATQSYQLPEALEKFSQRFLEDRTKE
GGVVPQHPLFVAIDELLAEPLTLRDLMITRALVEIRETVAKEKRRRGELGFDDMLSRLDS
ALRSESGDALAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWQHQPDTALLLIGDPKQAIY
AFRGADIFTYMKARSEVSAHYTLDTNWRSAPGMVNSVNRLFGLMDDAFMFREIPFQPVKY
AEKNQSLRFEFYGETQPAMTMWLMEGESCGIGDYQSYMAQVCAAQIRDWLKAGLRGEAML
ISGHDARPVSAADISVLVRSRQEAAQVRDALTQLAIPSVYLSNRDSVFETLEAQEMLWLL
QAVMAPEKENTLRSALAASMMGLNARDIDMLNGNENAWDRVVDEFVGYRQIWQKRGVMPM
LRALMSARQIAENLLATAGGERRLTDILHISELLQEAASQLESEHALVRWLSQHILEPDS
NASSQQMRLESDSHLVQIVTIHKSKGLEYPLVWLPFITNFRVQDQAFYHDRNSFEAVLDL
SEADESVALAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR
LLQKGEPMDAVGLRSAIDAVCDENIVCRIPDAVSMEPLPGTVASEASLNARRVQRTPGDN
WRVTSYSGLQQRGHGIAQDLMPRLDIDATGVGEVVEEPELTPHQFPRGASPGTFLHSLFE
DLDFIQPVEAAWVQEKLELGGYDADWEPVITAWVTAILHAPLNETGVSLSQLSAREKQVE
MEFYLPISQPLIAENLDALIRQFDPLSAGCPPLEFTQVRGMMKGFIDLVFRHNGRYYLLD
YKSNWLGENSAAYTPEAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYERHFGGVIY
LFLRGVDSKQPQQGIYTTRPAGELITRMDEMFAGVALEEAS
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatgtcgccgagtcccttgatcccctgcgcttgcccctcacgggcgagcgcctg
attgaagcctctgcgggcaccggcaaaacctttactatcgcggcgctctatctgcgcctg
ctcctcgggctcggcgggtcttccgcctttccccgtcccctgaccgttgaagaactgctg
gtggtaacctttactgaggccgccaccgaagagttgcgcgggcgtatccgcagtaatatt
catgagctgcgtatcgcctgcctgcgcgaatcgactgacaaccccctttatgcccgtctg
ctggatgaaatcgacgataaaaagcaggcggcgcagtggctgctgctcgccgaaagacag
atggatgaggcggcggtattcaccatccacggtttttgtcagcgcatgctgagcctgaat
gccttcgaatccggcatgttatttgaacaacagctgatcgaggatgaatcgctgctgcgc
tatcaggcctgtgcggacttctggcgccgtcactgttaccccctgccgcgtgaaattgcc
caggtggtgtttgaaacgtggaaagggccgcaggcgctgctggcggatattaaccgttac
ctgcaaggggaagcgccggttatcaaagcgccaccgccggatgacgaaacgctggcgtcc
cgtcatcagcagatcgtgcagcgaatcaatgcgcttaagcaacaatggtgtgatgcggtg
ggtgaacttgagggattgatggaagcctcaggcatcgaccggcgtaaatttaaccgtggc
aaccagggcaaatggattgagaagatcagcgcctgggcgcagtccgcaacgcaaagctac
cagttgccagaggcactggagaaattctctcagcgtttccttgaggacagaaccaaagaa
ggcggcgttgtgccgcagcatccgctgtttgtcgcgattgatgaattactggcggaaccg
ctgacgctcagagatctgatgatcacccgcgcgctggtggagatccgtgaaacggtggcg
aaagaaaaacgccgccggggtgagctggggtttgacgatatgctcagccgactggatagc
gcgctgcgcagtgaaagcggcgatgcgctggcggcggcgatccgtacccgcttcccggta
gcaatgatcgatgagttccaggataccgatccgcagcaataccgtattttccgccgcatc
tggcagcatcagccagacaccgcgctgctactgattggcgacccgaagcaggcgatttat
gcgtttcgcggcgcggatatttttacctatatgaaggcccgcagtgaggtcagcgcgcac
tataccctcgacaccaactggcgttccgcgccaggcatggtgaacagcgtcaacaggctg
ttcggcctgatggatgacgccttcatgttccgcgagatcccgttccagccggtgaaatac
gctgaaaaaaaccagtcgctgcgttttgaattttacggcgaaactcagcccgcaatgacg
atgtggttgatggaaggagaaagctgcggaataggcgattatcaaagctatatggcgcag
gtgtgtgctgcgcagatccgcgactggctgaaggccgggttgcgcggagaggcgatgctt
atcagcggccacgacgcgcgtccggtgagcgcggcggatatcagcgtgctggtgcgtagc
cgccaggaagcggcgcaggtacgcgatgctctgacacaactggcgattccgtccgtctat
ctttccaaccgcgacagcgtgtttgaaacgctggaagcgcaggagatgctctggctatta
caggcggtgatggcgccggaaaaagaaaatacgctacgcagcgcgctggcggcctcaatg
atggggttgaacgcgcgcgacattgacatgctcaatggcaatgaaaacgcctgggatcgg
gtggttgacgagtttgtcggctaccgtcaaatctggcaaaaacgtggcgtgatgccgatg
ctgcgtgcgctgatgtcagcgcgacagattgcggagaacctgctggcaacggcgggaggt
gagcgtcgcctgaccgatattttgcacatcagtgagctattgcaggaggccgcttcgcaa
ctggaaagcgagcatgcgctggtgcgctggctctcgcagcatattcttgagcctgacagc
aatgcttccagccagcaaatgcgtctggaaagcgacagccatctggtgcagatcgtcacc
atccacaagtcaaaagggctggagtatccgctggtctggctgccgtttatcactaatttc
cgcgtgcaggatcaggcgttttatcacgaccgcaactcgtttgaagcagttctggatctg
agcgaggcggacgaaagcgtggcgctggcggaagccgaaaggctggcggaagatttgcgt
ttactgtacgtggcgctgacgcgttcagtctggcactgcagtctgggtgtcgcacctctg
gttcgtcgtcggggcgataaaaagggcgataccgatgtgcatcagagcgcgctggggcgt
ctgctgcaaaaaggcgaaccgatggatgccgtcgggctacgctcggcgatagacgcagtt
tgcgatgagaacatcgtctgtcgtatcccggacgcggtcagtatggagccgttgcctggc
accgttgcgagcgaggcgtctctgaatgcccgacgggtacaacgaacgccgggcgacaac
tggcgggtgaccagctattccggcctgcaacagcgtggtcacggcattgcacaggatctg
atgccgcgactggatatcgatgcgacaggcgtgggtgaagtggttgaggagccggaactg
acgccgcaccagttcccacgcggcgcatcgccaggaacatttttacacagcctgtttgaa
gatctcgattttatccagccggttgaggctgcctgggtgcaggaaaaactggagcttggt
ggctacgatgccgactgggaaccggtcatcaccgcgtgggtgacggcgattctccatgcg
ccactcaatgagactggcgtcagtctgagccagctttctgcgcgtgaaaaacaggtcgag
atggagttttatctgcccattagccaaccgcttattgcggaaaacctggatgcgctgatc
cgccagtttgacccgctctcggcgggctgtccgccactggagttcacccaggttcgcggg
atgatgaagggctttatcgatctggtatttcgtcacaacgggcgctattacctgctggat
tacaaatcgaactggctgggagaaaacagcgccgcttacaccccagaggcgatggcggcg
gccatgcaggcgcatcgctatgatttgcagtatcagctctataccctcgcgctgcaccgg
tatctgcgccatcgcatcgcagattacgactacgagcgccattttggcggcgtgatttat
ctgttcctgcgcggcgtggacagcaaacagccgcagcaggggatttacaccacacgcccg
gcgggtgagttgattacccggatggacgagatgtttgccggggtggcgctggaggaggca
tcatga
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