Citrobacter amalonaticus FDAARGOS_165: AL524_16765
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Entry
AL524_16765 CDS
T04738
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
caf
Citrobacter amalonaticus FDAARGOS_165
Pathway
caf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
caf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AL524_16765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caf03400
]
AL524_16765
Enzymes [BR:
caf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AL524_16765
DNA repair and recombination proteins [BR:
caf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AL524_16765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AMG54618
LinkDB
All DBs
Position
3475616..3479062
Genome browser
AA seq
1148 aa
AA seq
DB search
MPEQQRYTLPVKAGDQRLLGELTGAACATLVAEIAERHDGPVVLVAPDMQNALRLHDEIR
QFTDQMVMSLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALRLQLDSAGYRHVDQVMEHGEYATRGALLDLYPMGSEQPY
RLDFFDDEIDSLRLFDADTQRTLEEVDAINLLPAHEFPTDKTAIELFRSQWRDTFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGDLENSAERFQADTL
ARFENRGVDPMRPLLPPESLWLRVDELFSELKRWPRVQLKTDHLPAKAANTNLGFQSLPD
LAVQAQQKSPLDALRKFLETFNGPVIFSVESEGRRESLGELLARIKVAPKRIMRLDDATE
AGRYLMIGAAEHGFIDTTRHLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA
PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDGFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQSDVKL
KDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDALVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDYIPDV
NTRLSFYKRIASAKSENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG
NEKGGTIEFAEKNHVNPGWLIGLLQKQPQHFRLDGPTRLKFIQDLTERKTRMDWVRQFMQ
QLEENAVA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaacaacaacgttacacgctgcccgtgaaagcgggcgatcagcgcctgttaggt
gaactgaccggggctgcctgcgccacactggtggcggaaattgccgaacgtcatgatggt
cccgtcgtgctcgtggcgcccgatatgcaaaacgcgctgcgcctgcatgatgaaatccgt
cagtttaccgatcagatggtcatgagcctcgcggactgggaaacactgccctacgacagt
ttctccccgcatcaggaaattatctcctcacgtctctccacgctgtatcagttaccgtcg
atgcagcgcggcgtgctgatcgtcccggtcaataccctgatgcagcgcgtctgcccgcac
agctatctgcacggtcatgcgctggtgatgaaaaaaggccagcgtttatcgcgcgatgcc
ctgcgtttacagctcgacagcgctggttaccggcatgttgatcaggtcatggaacatggc
gaatacgctacccgcggcgcgctgctggatttgtaccctatgggcagcgaacagccctat
cgtctggatttcttcgacgatgaaattgacagtctgcgcctgtttgacgcggacacccag
cgcacgctggaagaagtcgacgccatcaatctgctgcccgcccacgagttcccaaccgac
aaaacggcgatcgaactgtttcgcagccagtggcgcgataccttcgaggtgaagcgcgac
gcagagcatatttatcaacaggtcagcaaaggcactttgccggcggggatcgaatactgg
cagccgctgtttttcagcgagccgctgccgccgctgtttagctatttcccggccaatacg
ctggtggtcaatactggcgatttagaaaacagcgccgagcgtttccaggccgatacgctg
gcgcgtttcgaaaaccgtggcgtggatccgatgcgtccgctgctgccaccggagtccctc
tggttgcgtgtcgatgagctcttttctgaactcaaacgctggccgcgcgtgcagctcaaa
accgaccaccttcccgccaaggcggctaataccaacttaggcttccagtcgctgccggat
ctcgcggttcaggcgcagcaaaaatcaccactggatgcgctgcgcaaattcctcgagacc
ttcaacgggccggtgattttctcggttgagagtgaaggccgtcgtgaatctctgggtgaa
ctgctcgccagaatcaaagtcgcgccgaagcgcattatgcgtctggatgacgcgacggag
gctggacgctacctgatgattggcgccgccgagcacgggtttatcgatacgacgcgccat
ctggcactcatttgtgaaagcgacctgctgggcgagcgcgtggcgcgccgtcgtcaggat
tcgcgccgcacgattaacccggatacgctgatccgcaacctggcagagttgcatccgggt
caacccgtggtgcatttggagcacggcgttggacgctatgccgggatgaccacgctggaa
gcgggcgggatcaaaggtgaatatctgatgctcacctacgctaatgacgccaaactgtac
gtcccggtctcctctttgcatctgatcagccgttacgccggaggcgcagaagagaacgca
ccgctgcataaactcggcggcgacgcctggtcacgcgcgcgacaaaaagcggcagagaaa
gtgcgcgacgtggcagccgagttgctggacatctacgcccagcgcgcggcaaaagagggc
ttcgccttcaaacacgatcgcgagcagtatcaactgttctgcgacggtttcccctttgaa
accacccccgaccaggcgcaggcgattaacgcagtacttagcgacatgtgtcagccgctg
gcgatggaccgcctggtgtgtggtgacgttggatttggtaaaaccgaagtggcgatgcgc
gccgcgtttctcgcggtcgaaaaccacaagcaggtggcggtgctggtgccaaccactctg
ctcgcccagcaacactttgataatttccgcgaccgttttgccaactggccggtgcgcatc
gaaatgctttcccgcttccgtagcgccaaagaacaggcgcagatcctggaacaggttgcc
gaagggaaaattgatattctgatcggtacgcataaactgctgcaaagcgatgtgaaactg
aaagatctggggctactgatcgtcgatgaagagcaccgcttcggcgtgcggcataaagag
cggatcaaagcgatgcgcgccgatgtggacattctgacgctgaccgccacgccaatcccg
cgtacgctgaacatggccatgagcggcatgcgcgatctgtcgattatcgccacgccgcca
gcgcggcgtctggcggtgaaaacgtttgttcgcgagtacgatgcactggtggtccgtgag
gcaattctgcgtgaagtgctgcgcggcgggcaggtctactatctttataatgatgtcgag
aacatccagaaagccgccgacaggctggcggagctggtgccggaggcacgaattgccatt
ggtcatgggcagatgcgcgaacgcgaactggaacgcgtgatgaacgacttccaccatcag
cgttttaacgtgctggtctgtaccaccattatcgaaaccgggattgatatcccgaccgcc
aacacgattattatcgagcgtgcggatcatttcggtctggcacagttacaccagttgcgc
ggccgcgtaggacgttcacaccatcaggcgtatgcctggctgctgacgccgcatcccaaa
gcgatgaccaccgacgcgcaaaaacgcctggaagcgattgcctcgctggaagacctgggg
gcgggctttgcgctggcgactcacgatctggagatccgcggcgcaggtgaactgctcggg
gaagaacagagcggttcgatggaaaccatcggcttctcgctgtatatggagctgctggaa
aacgccgtcgatgccctgaaggccggacgcgagccatcgctggaagatctcaccagccag
caaactgaggtcgaactgcgtatgccgtcgctgctgccggacgattacatcccggacgtg
aatacccgcctgtcgttctacaagcgtatcgccagcgcgaagagcgagaatgaactggaa
gagatcaaagtggagctgatcgaccgcttcggtctgctgcccgatccggcgcgtaccctg
ctggatatcgcccgcttgcgtcaacaggcgcagaagctgggtatccgcaaactggaaggc
aatgagaaaggcggcactatcgaattcgccgagaagaaccatgttaacccaggctggctg
attggactgctgcaaaaacagccgcagcacttccgtcttgacgggccgacccgactgaag
ttcatccaggatctgaccgagcggaaaacgcggatggactgggtgcgtcagtttatgcag
caactggaagaaaacgccgtagcgtga
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