Citrobacter amalonaticus FDAARGOS_165: AL524_16925
Help
Entry
AL524_16925 CDS
T04738
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
caf
Citrobacter amalonaticus FDAARGOS_165
Pathway
caf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL524_16925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caf03019
]
AL524_16925
03009 Ribosome biogenesis [BR:
caf03009
]
AL524_16925
Enzymes [BR:
caf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AL524_16925
Messenger RNA biogenesis [BR:
caf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AL524_16925
Ribosome biogenesis [BR:
caf03009
]
Prokaryotic type
rRNA processing factors
AL524_16925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
AMG54645
LinkDB
All DBs
Position
3509101..3512394
Genome browser
AA seq
1097 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPEVPPA
PTPAEPPVKAAAPKAAVAPAAPAEPGLLSRFFGALKSLFSGSEEVKPAEQPAPKAAEKPE
RQQDRRKRQNNRRDRNDRNERRDNRDNRGERSENGENRDENRRNRRNAQQNAENRDNRQQ
ATDVADKAKSGDEQQQQPRRERNRRRSDDKRQAQQEVKALNLDEQQTPETEQEERVRQAQ
PRRKQRQLNQKVRYHDQASEVAEVETATTEENVVAPVAAQAAPAQSTELVKVPLPVVTEA
TPEQDDNGEARDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPLQSPMPLTVACASPEMA
SGKVWIRYPVARPQDAQPEAQEIEQVQAQPVVTEPQAVAAAVEAVSAVEPAVETVVETVA
EAPVQAEAVVETTHPEVIAAPVVEQPQVIADADVPVAEEIAAQAEPVAETQETAPVVEET
PDVVTVEPETMTVVPDVVAAEPVAVEPEVVAEPEVIAEPVAAPVIVEAPTAPAPVSEPVV
VAPVAEAAAPVVAESVAEHSHATAPMTRAPAPEYVPEAPRHSDWQRPAFAFDGKGAAGGH
TASHSASAGPTRPQPVE
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgtgttgcccttgtagat
gggcagcgtctgtacgacctggatattgaaagtcctggacatgaacagaaaaaagcgaac
atctataaaggcaaaattacccgtattgaaccgagtctggaagcggcttttgttgattac
ggcgctgaacgtcacggtttcctcccgttaaaagaaattgcccgcgaatatttccccgct
aattacaacgctcatggtcgtccaaacatcaaagatgtgctgcgcgaaggccaggaagtt
attgttcagattgataaagaagaacgtggcaacaaaggcgctgccctgaccacttttatc
agcctggcgggcagctatctggttctgatgccaaacaacccgcgtgcggggggtatctct
cgtcgcatcgaaggcgacgaccgtaccgagctgaaagaagcgctggcaagccttgaactg
cctgatggcatgggtcttattgtacgtactgcgggcgtaggcaaatctgccgaagcgctg
cagtgggacttaagcttccgtctgaaacactgggaagccattcagaaagccgcggaaagc
cgccctgctccgttcctgatccatcaggagagcaacgtgattgttcgcgccttccgcgac
tatctgcgtcaggatatcggtgaaatccttatcgataacccgaaagtgctcgaactggcg
cgccagcatattgcggcgttaggtcgtccggatttcagcagcaaaatcaaactttacacc
ggtgaaatcccgctgttcagccactatcagatcgagtcgcagattgaatccgcgttccag
cgtgaagtgcgtctgccttccggcggctctatcgttatcgacagcaccgaagcgttaacc
gccatcgacattaactccgctcgcgcaacccgcggcggcgatattgaagaaacggcgttc
aacactaacctggaagcggccgatgagatcgcccgtcagttgcgcctgcgtgacctcggc
ggcctgatcgttatcgacttcattgatatgaccccggtacgccatcagcgtgcggtggaa
aaccgtctgcgtgaagcggtccgccaggatcgtgcgcgtatccagatcagccatatttca
cgcttcggcctgctggaaatgtcccgtcagcgcctgagcccgtcgctgggcgagtccagc
catcacgtctgcccacgctgtagcggtaccggcaccgtgcgtgataacgagtcgctgtcc
ctgtctattctgcgtctgattgaagaagaagcgctgaaagagaatactcaggaagtccac
gcgattgtcccagtgccaattgcctcctatctgctcaacgaaaaacgtactgccgttaat
gcgattgaaacccgacaggatggcgtgcgttgcgtgatcgtacctaacgatcaaatggag
acgccgcactactccgtactgcgcgtgcgtaaaggtgaagagacgccgactctgagctac
atgctgccgaagctgcatgaagaagcgatggcgttaccgtctgaagaagagttcgccgag
cgtaaacgtcctgagcagcccgctcttgccaccttcgcgatgccagaagttccgcctgcg
ccaacgcctgccgaaccgccagtgaaagccgctgcgccgaaggccgccgttgcgccagcc
gctccggcagagccggggctgctgagccgtttctttggcgcactgaaatcgctgttcagc
ggtagtgaagaagtgaaacctgccgagcagccagcgccgaaagccgcggagaagccggag
cgtcagcaggatcgccgtaaacgccagaacaaccgtcgtgaccgtaacgatcgcaacgaa
cgtcgtgacaaccgcgataaccgtggcgaacgttcagaaaatggcgagaaccgcgacgag
aatcgccgtaaccgccgtaatgcgcagcagaatgccgaaaaccgtgataaccgtcagcaa
gcgaccgacgtagcggataaagcaaagtctggtgatgagcagcagcagcagccacgtcgc
gaacgtaaccgccgtcgcagtgatgataaacgtcaggctcagcaggaagtaaaagcgctg
aatcttgatgagcagcagactccagagaccgaacaggaagagcgcgttcgtcaggctcag
ccgcgccgtaaacagcgtcagctgaaccagaaagttcgttaccacgaccaggcctcagaa
gtggcagaggtagaaaccgccaccacggaagagaacgttgtcgcaccagttgcagcacag
gctgcgccagcgcaaagcactgaactggtgaaagtgccgctgcctgtcgtgacagaagca
accccagagcaggatgacaatggtgaagcacgtgataacgccggtatgccgcgtcgttcg
cgtcgttccccacgtcatctgcgtgtgagcggccagcgtcgtcgtcgttatcgtgacgaa
cgttacccactgcagtcgccgatgccgctgactgtcgcctgcgcctcgccagaaatggcg
tccggcaaagtgtggatccgctacccggtagcccgtcctcaggatgcgcagccagaagca
caggaaatcgaacaggtacaggcccagcctgttgtgaccgaaccgcaagccgtggcagcc
gccgttgaagctgtttccgcagtcgaacccgccgttgaaactgtcgttgaaacggtagca
gaagcgccggttcaggctgaagccgtggttgaaacgacgcatccggaagttattgccgcc
ccggtggttgaacagccgcaggtgattgccgacgccgatgtgccggtcgccgaagagatt
gccgctcaggcagagcctgtcgctgaaacgcaggaaaccgctccggtcgttgaagagaca
ccagacgtggttacggtcgagcctgaaacaatgactgtcgtgcctgacgtggttgcggct
gaacctgtcgccgttgaacctgaagtggttgcggagcctgaagtcattgcagaaccggtt
gcagcgccagtgatcgttgaagcccccacagcgcctgcgccagtatccgaacccgttgtc
gttgcaccggtcgcagaagccgcagcgccagtcgtggcagaatctgttgctgagcacagc
cacgcaaccgcaccgatgacccgtgcgccagcgccggaatatgtgcctgaagcgccacgc
cacagtgactggcagcgccctgctttcgcctttgatggtaaaggcgccgcaggtggtcac
actgcctcgcacagtgcctctgctggaccgactcgtcctcagcctgtcgagtaa
DBGET
integrated database retrieval system
