Citrobacter amalonaticus FDAARGOS_165: AL524_18610
Help
Entry
AL524_18610 CDS
T04738
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
caf
Citrobacter amalonaticus FDAARGOS_165
Pathway
caf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL524_18610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caf03019
]
AL524_18610
Enzymes [BR:
caf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AL524_18610
Messenger RNA biogenesis [BR:
caf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL524_18610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
P-loop_SecA
Utp25_C
DUF6482
Motif
Other DBs
NCBI-ProteinID:
AMG54951
UniProt:
A0ABY0HRF2
LinkDB
All DBs
Position
complement(3860338..3861699)
Genome browser
AA seq
453 aa
AA seq
DB search
MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL
QHLITKQPHGKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI
GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
EKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQRSGGGGRGRGQGQGQGAGRAQQPRRQD
GGASKGKPRGAEGKPAGEKPRPPRRPRRITPVQ
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattccctgggtttaaatcctgatattctgcgcgccattgctgagcagggt
taccgtgaacctacccctattcagcaacaggcgatccctgccgtgctggaaggtcgcgac
ctgatggcgagtgcgcagaccggtaccggtaaaacggcgggctttacgctgccgctgtta
cagcaccttattaccaaacagccgcatggcaaagggcgtcgcccggtgcgtgcgctgatc
ctgacgccaacgcgtgagctggcggcgcagattggtgaaaacgtccgtgattacagcaag
tatctgaacattcgctcgctggtggtttttggcggcgtgagtattaacccgcagatgatg
aaactgcgcggtggcgtcgatgtgttggtggcaacgccgggccgcttgctggacctggaa
caccagaacgcggtgaagctggaccagattgagattctggtgctggatgaagcggaccgt
atgctggatatgggctttattcacgatattcgccgcgtgttagcgaaactgccggcgaag
cgtcagaacctgctgttttccgcgacgttctctgatgagatcaaagcgctggctgaaaag
ctgttgcataacccgctggaaattgaagtggcgcgtcgcaacacggcgtctgagcaggtg
acgcagcacgtccattttgtcgataagaaacgcaagcgcgaactgttgtcgcagatgatc
ggtcagggcaactggcagcaggtactggtctttacccgcaccaaacacggcgccaatcac
ctggcggaacagctcaacaaagatggtatccgcagcgcagcgatccacggtaacaagagc
cagggggcgcgtacccgtgcgctggcggatttcaaatcaggcgatatccgcgtgctggtg
gcgactgacattgcggcgcgaggtctggacatcgaagaactgccgcacgtggtgaactac
gagctgccgaacgttccggaagattatgtgcatcgtatcggtcgtaccggtcgtgctgcg
gcgacgggggaagcgctgtcgctggtttgtgttgatgaacacaaactgctgcgtgacatt
gaaaaactgctgaaaaaagagatcccgcgtattaccacgccgggctatgagccagatccc
tcgatcaaagctgagccgatccagaatggtcgtcagcagcgtagcggtggtggcggtcgg
ggccgtggtcagggacaagggcagggcgcgggtcgcgctcagcagccgcgtcgtcaggac
ggtggcgcgtcgaagggcaaaccgcgtggcgcagaaggcaaaccggcgggtgaaaagcca
cgtccaccgcgtcgcccgcgcagaattacacccgtacagtaa
DBGET
integrated database retrieval system
