Citrobacter amalonaticus FDAARGOS_165: AL524_23820
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Entry
AL524_23820 CDS
T04738
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
caf
Citrobacter amalonaticus FDAARGOS_165
Pathway
caf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AL524_23820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caf03019
]
AL524_23820
03009 Ribosome biogenesis [BR:
caf03009
]
AL524_23820
Enzymes [BR:
caf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AL524_23820
Messenger RNA biogenesis [BR:
caf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AL524_23820
Ribosome biogenesis [BR:
caf03009
]
Prokaryotic type
rRNA helicases
AL524_23820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
DeaD_C
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AMG55876
LinkDB
All DBs
Position
complement(4981977..4983905)
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AA seq
642 aa
AA seq
DB search
MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGG
RDVLGMAQTGSGKTAAFSLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG
VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSRLSGLVLDEADEMLR
MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS
YWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQAL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG
RALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQY
RALLAKLQPTAEDEELDIETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDR
NDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIK
LFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTERRGGGRSFGGERREG
GRGFGGERREGGRGDGRRFSGERREGSRAPRREEGSSRRRDA
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgatgagttatgtagactggccgccattaattttgaggcacacgtactacatggctgaa
ttcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcccttaacgat
ctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctgctgggcggt
cgcgatgttctgggtatggcccagaccggtagcggcaaaacggcagcgttctctttaccg
ctgctcaacaatcttgatcctgagctgaaggcacctcagattctggtgctggccccgacc
cgcgaactggcggttcaggtagccgaagcgatgacggatttctctaaacacatgcgcggc
gtgaacgtggttgccctgtacggcggccagcgttatgacgtgcagttacgcgccctgcgt
caagggccgcagatcgtcgtcggtacgccgggtcgtctgcttgatcacttaaaacgcggt
accctggatctgtctcgtctgagcggtctggtactggacgaagccgatgaaatgctgcgt
atgggcttcatcgaagacgttgaaaccatcatggcgcagatcccggaaggtcatcagacc
gctctgttctctgccaccatgccggaagcgattcgtcgcattacccgccgcttcatgaaa
gagccgcaggaagtgcgcattcagtccagcgtcactacccgtccggacatcagccagagt
tactggactgtctggggcatgcgtaaaaacgaagcgctggtgcgtttcctggaagcggaa
gattttgatgcggcgattatcttcgttcgtaccaaaaacgcgactctggaagtggctgaa
gcgctggagcgtagcggctataacagcgccgcgctgaacggcgacatgaaccaggcgctg
cgtgagcagaccctggaacgtctgaaagacggtcgtctggatatcctgattgcaaccgac
gttgcggcccgtggcctggacgttgagcgtatcagcctggtcgtaaactacgatatccca
atggattccgagtcttacgttcaccgtatcggtcgtaccggtcgtgcgggtcgtgcaggc
cgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgtaacattgaacgcacg
atgaagctgaccattccggaagttgaactgccgaacgctgaactgttgggcaaacgtcgt
ctggaaaaatttgcggctaaagtacagcagcagctggaaagcagcgatctggatcagtac
cgtgcgctgttggcgaaactgcagccgacggcggaagacgaagagctggatatcgaaact
ctggctgccgctctgcttaagatggcgcagggcgaacgtccgctgattctgccgccagat
gcgccgatgcgtccgaagcgtgagttccgcgaccgtgacgatcgtggtccgcgtgaccgt
aacgatcgtggcccgcgtggcgaccgtgaagaccgtccgcgtcgtgaacgtcgtgacgtt
ggcgatatgcagctgtaccgcattgaagtgggccgtgatgatggcgttgaagttcgtcat
atcgttggcgcgattgcaaacgaaggcgacatcagcagccgttacattggtaacatcaag
ctgttcgcttcgcactccaccatcgaactgccgaaaggtatgccgggtgaagtcctgcag
cactttacgcgcactcgcatcctgaacaagccgatgaacatgcagctgctgggcgatgca
cagccgcacactgaacgtcgtggcggtggtcgtagctttggtggcgagcgtcgtgaaggt
ggtcgtggcttcggcggtgagcgtcgtgaaggtggtcgtggtgatgggcgtcgtttcagc
ggcgaacgtcgcgaaggtagccgtgcaccacgtcgtgaagaaggctccagccgtcgtcgt
gacgcgtaa
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