Corynebacterium afermentans subsp. lipophilum: CAFEL_00015
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Entry
CAFEL_00015 CDS
T09361
Symbol
recF
Name
(GenBank) DNA replication and repair protein RecF
KO
K03629
DNA replication and repair protein RecF
Organism
cafe
Corynebacterium afermentans subsp. lipophilum
Pathway
cafe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cafe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CAFEL_00015 (recF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cafe03400
]
CAFEL_00015 (recF)
DNA repair and recombination proteins [BR:
cafe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CAFEL_00015 (recF)
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Motif
Pfam:
SMC_N
AAA_23
AAA_15
AAA_21
RsgA_GTPase
SbcC_Walker_B
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
WJY57804
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Position
3533..4714
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AA seq
393 aa
AA seq
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MHVRELDLRDFRSWPELNLKLEPGVTVFAGRNGHGKTNIVEAVHYSSKLSSHRVSTDAPL
IHANAENARVSATTVNDGRALTTHLLIKAHGANQAQINRTRLKSARELLGVLRVVMFSPE
DLRLITGEPAERRKFLDDLAALRTPRLGGARADYEKVLRQRNALLKSSNMALRRGYDDED
GASALSTLDVWDGQLAALGAQVVAGRLSLVDELSERITESYQSVAPESRPASVAYSSTLD
RAVTELAGGPSRDPAVFEAAMLAELGRRRKDEIDRGATLVGPHRDDLALKLGDQPAKGYA
SHGETWSYALALHLAEYQLLASEGTDPVLILDDVFAELDAKRRERLVHVAADAEQVLVTA
AVGDDLPGNLDDAVAARYAVTMQDGVSAIERSD
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgcacgtccgcgagcttgatctgcgtgatttccgctcgtggcccgagctgaatctcaag
cttgagccgggcgtgacggttttcgcaggccgcaacggccacggcaaaaccaacatcgtc
gaggcggtccattactcgtcgaagctgtcgagccatcgcgtatcgacggatgctccgctc
atccacgccaacgccgagaacgcccgcgtgtccgccaccaccgtcaacgacggtcgcgca
ctgaccacgcacctgctgatcaaggcgcacggggcgaaccaggcccagatcaaccgcacc
cggctgaaatccgcccgcgagctgctgggcgttttgcgcgtggtgatgttctccccggag
gacctgcgcctgatcaccggcgagccggcggaacgccgaaagttcttggacgacctcgca
gcactgagaaccccgcgcctcggcggggcccgcgcggactacgagaaggtgctgcgccag
cgaaacgctttgctgaaaagctcgaacatggcgctgcgccgcggctacgacgacgaagac
ggcgccagcgcgctttccacgctggacgtgtgggacggtcagctcgcggcgctcggcgcg
caggtggtggcgggccggctcagcctcgtcgatgagctgtccgagcgcatcaccgagtcc
taccagtccgtcgcgcccgagtcgcgccccgcatcggtggcgtacagctccactcttgac
cgcgcggtgaccgagctcgctggcgggccctcgcgcgacccggcggtgtttgaggccgcc
atgctcgctgagctgggccgtcgccgcaaggacgagattgaccgcggcgccaccctcgtg
ggcccgcaccgcgacgacctggcgctcaagctcggcgaccaacccgccaagggctacgcc
tcccacggcgaaacctggtcctacgcgctggcgctccacctcgccgaataccagcttctg
gccagcgagggcaccgacccggtgctgatcctcgacgacgtcttcgccgagctcgacgcc
aagcgccgcgagcgcctcgtgcatgtcgccgccgacgctgagcaggtcctggtcaccgcc
gcggtgggcgacgacctgcccggtaacctcgacgacgccgtcgccgcgcgctacgccgtg
accatgcaggacggggtgagcgccattgagcgatctgattaa
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