Corynebacterium afermentans subsp. lipophilum: CAFEL_01570
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Entry
CAFEL_01570 CDS
T09361
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cafe
Corynebacterium afermentans subsp. lipophilum
Pathway
cafe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cafe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CAFEL_01570 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cafe03021
]
CAFEL_01570 (rpoC)
03400 DNA repair and recombination proteins [BR:
cafe03400
]
CAFEL_01570 (rpoC)
Enzymes [BR:
cafe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CAFEL_01570 (rpoC)
Transcription machinery [BR:
cafe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CAFEL_01570 (rpoC)
DNA repair and recombination proteins [BR:
cafe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CAFEL_01570 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WJY58099
LinkDB
All DBs
Position
344391..348389
Genome browser
AA seq
1332 aa
AA seq
DB search
MFDVNLFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLERIIYFAANIVTSVDEEARHTDMSTLEAEMLMEKKDVEDDTNSEIADRAQKLEED
LAELEASGATAAARKKVQNAADKEMQHMREAGEREVERLDEIWTTFQKLAPKQMIIDENL
YEELVDRYEDYFTGGMGAEAIQTLIRNFDLEAEAEELRGIIAEGKGQKKVRALKRLRVVA
AFQRSGNDPAGMILDAIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRMIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGTRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHECGLPKRMALELFKPFVMKRLVDNDYAQNIKSAKRMVERQR
PEVWDVLEEAISEHPVLLNRAPTLHRLGIQAFEPKLVEGKAIQLHPLACEAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLSSNNILSPASGKPLAMPRLDMVTGLYFLTMEKGPQEIGGE
GAYAPADDNGPARGVYSSYREAIMAYDLGVLGLQAPIKVRIDHLRPTPEIEAEQFPDGWE
KGQAWMTDTTLGRIMFNELLPFNFPYQEGAMVRKGGGGGKLLLGDIIQSMVEKYPMITVA
QVLDKMKDAGFYWATRSGVTISMADVLILPNKTEVLEQYEKEAEAIERKFWEKGALTEEN
RYDRLVELWQDATNKVGQAVEDMYPDHNPIPMIVKSGAAGNMRQIWTLAGMKGMVVNSRG
EYITRPIKTSFREGLSVMEYFNNSHGSRKGLADTALRTADSGYLTRRLVDVAQDVIVREE
DCGTRQGVRVPVAVESGDSFVRHDLVETSVSGRVLSSDVKGADDKVIAEAGTELTEERID
ELVAAGVTEVKVRSVLTCQTPTGVCAKCYGKSMASGQLVDIGEAVGIVAAQSIGEPGTQL
TMRTFHQGGVGGDITGGLPRVQELFEARVPKNRAPIASVAGTISLEDEGNFWTLTIHPDD
GSDVVVYEKLSKRQGLAQVRRPMESNPDAMIERGLREGDHVEVGERLLRGAADPHDVLEV
LGRRGVEKHLIDEVQAVYRTQGVSIHDKHIEIIIRQMLRRGTVIDSGSTEFLPGTLVDLS
EARQVNAAAVADGGEPAEMRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDK
LIGLKENVIIGKLIPAGTGISRYRNIQVKPTEAARSAAYSIPTFGDSIYGDEGYGEFTGA
SVPMDEFGFEEL
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgacgtaaacctcttcgacgagcttcgcatcggcctggccaccgccgacgacatc
cgccgttggtcccacggcgaggtgaagaagcccgagaccattaactaccgcaccctcaag
ccggagaaggacggcctgttctgcgagcgcatcttcggcccgacccgcgactgggagtgc
gcctgcggcaagtacaagcgtgtccgctacaagggcatcatctgtgagcgctgcggcgtt
gaggtgaccaagtccaaggtgcgccgcgagcgcatgggccacatcgagctggccgctccg
gtgacccacatctggtacttcaagggtgtcccgtcccgcctgggctacctgctggacctg
gcgccgaaggacctcgagcgcatcatctacttcgcggcgaacatcgtcacctccgttgac
gaagaggcccgccacaccgacatgtccaccctcgaggcggagatgttgatggagaagaag
gatgtcgaggacgacaccaactccgagatcgcggaccgcgcgcagaagctggaggaggac
ctcgccgagctcgaggcttccggtgcgaccgccgctgcccgcaagaaggtgcaaaacgct
gcggacaaggaaatgcagcacatgcgcgaggccggcgagcgcgaggttgagcgcctggac
gagatctggaccaccttccagaagctcgcgccgaagcagatgatcatcgacgaaaacctc
tacgaggagctcgtcgaccgctacgaggactacttcaccggcggcatgggcgccgaggcg
atccagaccctgatccgcaacttcgacctcgaggccgaggccgaggagctgcgcggcatc
atcgccgagggcaagggccagaagaaggtccgcgcgctgaagcgcctgcgcgtcgtcgcg
gccttccagcgctccggcaacgacccggccggcatgatcctggacgcgatcccggtgatc
ccgccggagctgcgcccgatggtccagctcgacggtggccgctttgccacctccgacctg
aacgacctgtaccgtcgcgtgatcaaccgcaacaaccgtttgaagcgcatgatcgacctg
ggcgcgcccgagatcatcgtgaacaacgagaagcgcatgctgcaggagtccgtggacgcc
ctgttcgacaacggccgccgcggccgtccggtcaccggcccgggcacccgcccgctgaag
tccctgtccgacctgctcaagggcaagcagggccgcttccgccagaacctgctgggcaag
cgcgtggattactccggccgttccgtgattattgtcggcccgcagttgaagctgcacgag
tgcggtctgccgaagcgtatggcgctcgagctgttcaagccgttcgtgatgaagcgcctg
gtggacaacgactacgcgcagaacatcaagtccgccaagcgcatggtggagcgccagcgc
cccgaggtgtgggacgtgctggaagaggcgatttcggagcacccggtgctgctcaaccgc
gcaccgacgctgcaccgcctgggtatccaggccttcgagccgaagctggtcgagggtaag
gccatccagctgcacccgctggcctgtgaggcgttcaacgccgacttcgacggcgaccag
atggcagtccacctgccgctgtctgctgaggcgcaggctgaggcccgcgtgctcatgctg
tcgtcgaacaacatcctgtccccggcgtccggtaagccgctggctatgccgcgcctggac
atggtcaccggcctgtacttcctgaccatggagaagggcccgcaggagatcggcggcgag
ggcgcgtacgcacctgccgacgacaacggcccggcccgtggtgtctactcgtcctaccgc
gaggccatcatggcctacgacctgggcgttttgggcctgcaggcgccgatcaaggtgcgc
atcgaccacctgcgtccgaccccggagatcgaggccgagcagttcccggacggctgggaa
aagggccaggcctggatgacggacaccacgctcggccgcatcatgttcaacgagctgctg
ccgttcaacttcccgtaccaggaaggcgccatggtccgtaagggcggtggcggcggcaag
ctgctgctgggcgacatcatccagtccatggttgagaagtacccgatgatcaccgtcgcg
caggtgctggacaagatgaaggacgccggcttctactgggccacgcgttccggcgtcacc
atctccatggccgacgtgctcatcctcccgaacaagaccgaagtcctcgagcagtacgag
aaggaagccgaggccatcgagcgcaagttctgggagaagggtgcgctgaccgaggagaac
cgctacgaccgcctggtcgagctgtggcaggatgccaccaacaaggtgggtcaggccgtg
gaggatatgtacccggaccacaacccgattccgatgatcgtgaagtccggtgctgccggt
aacatgcgccagatctggaccctggccggcatgaagggcatggtcgtgaactcgcgcggc
gagtacatcacccgtccgatcaagacctccttccgcgagggcctgtccgtgatggagtac
ttcaacaactcccacggttcccgtaagggcctggccgataccgcgcttcgtaccgcggac
tccggctacctcacccgtcgtctggtggacgtggcgcaggacgtcatcgtccgcgaagag
gactgcggcacccgccagggcgtccgggttccggttgcggtcgagtccggcgactccttc
gtgcgccacgacctggtcgagacctccgtgtccggccgtgtcctgtcgtccgatgtcaag
ggcgccgacgacaaggtcatcgccgaggcgggcaccgagctgaccgaggagcgtatcgac
gagctcgtggcagccggcgtcaccgaagtcaaggtccgttccgtgctgacctgccagacc
ccgaccggtgtctgcgccaagtgctacggcaagtccatggcgtccggccagctcgtcgac
atcggcgaggctgtcggcatcgtggccgcccagtccattggtgagccgggtacgcagctg
accatgcgtaccttccaccagggcggcgtcggcggcgacatcaccggtggtctgccgcgt
gtgcaggagctgttcgaggcccgtgtgccgaagaaccgcgccccgatcgcgtccgttgcc
ggcacgatctcgctcgaggacgagggtaacttctggaccctgaccatccacccggatgac
ggctccgacgtggtggtctacgagaagctgtccaagcgccagggcctggcccaggtgcgc
cgcccgatggagtccaacccggacgccatgatcgagcgcggcctgcgcgagggcgaccac
gtcgaggtgggcgagcgcctgctccgcggcgccgccgacccgcacgacgtgctcgaggtc
ctcggccgccgtggtgtggaaaagcacctgatcgacgaggtccaggctgtgtaccgcacc
cagggtgtgtccatccacgacaagcacatcgagatcatcatccgccagatgctgcgtcgc
ggcaccgtcatcgactcgggttccaccgagttcctgccgggcaccctggtggatctgtcc
gaggcgcgccaggtcaacgccgcagctgtggcggacggcggcgagccggcggagatgcgc
tccgagatcatgggcatcaccaaggcctcgctagccacggagtcctggctgtcggcggcc
tccttccaggagaccacccgcgtgctcacggacgccgcgatcaacaagcgctccgacaag
ctgatcggcctgaaggagaacgtgatcatcggcaagctgatcccggccggtacgggcatt
tcccgttaccgcaacatccaggtcaagccgaccgaggcggcacgctccgcggcgtactcc
atcccgacgttcggcgactccatctacggcgacgagggctacggcgagttcaccggcgcc
tccgtgccgatggacgagttcggcttcgaggagctgtaa
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