KEGG   Corynebacterium afermentans subsp. lipophilum: CAFEL_03200
Entry
CAFEL_03200       CDS       T09361                                 
Name
(GenBank) putative ATP-dependent helicase Lhr
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
cafe  Corynebacterium afermentans subsp. lipophilum
Brite
KEGG Orthology (KO) [BR:cafe00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:cafe03400]
    CAFEL_03200
Enzymes [BR:cafe01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CAFEL_03200
    5.6.2.6  RNA 3'-5' helicase
     CAFEL_03200
DNA repair and recombination proteins [BR:cafe03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    CAFEL_03200
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD WH3_Lhr WH4_Lhr Helicase_C ResIII WH2_Lhr DUF6406 Cas3-like_C_2 PhoH
Other DBs
NCBI-ProteinID: WJY58420
LinkDB
Position
672013..676659
AA seq 1548 aa
MNAPILSRFHPQVAQWFGDVFAAPTAVQEQAWRAISDGENALVVAPTGSGKTLAAFLWSL
NSLVERAGQQALPIDGANSSTHGGVKVLYISPLKALGVDVENNLRAPLAGIARVAQKLGR
DMPDISVGVRSGDTPQSERNRQVRKPPDILITTPESLYLMLTSKAAGILRTVDTVIVDEI
HALAGTKRGVHLSLSLERLRRLAGDFQRIGLSATVRPIEAVANFLGPTTTIINPPAEKRW
HLDVRVPVDDMSDLPVPEDASTIGDAVFDDAVFDDALEEAEPVQPPGAVNSIWPHIERSI
YDEVMAHRSTIVFVNSRRTAERLTSQLNELWAKEHDPEALSPTTRRPPAQLMKSVDTAGH
AANVIARAHHGSVSKDERAQTETMLKEGTLRAVVSTSSLELGIDMGAVDLVIQVESPPSV
ASGLQRVGRAGHTVGAVSEGTFYPKHRSDLVQTAVTVPRMREGLIEELHTPRSPLDVLAQ
QTVAAVAVEDLDVDEWYDTVRRAWPYRDLAREVFDSVIDLVIGIYPSTDFAELRPRAILE
GSVLKARPGAQRVAVTNAGTIPDRGMFGVFLLAGAEDKAPRRVGELDEEMVYESRVGDVF
TLGASSWRIENITRDQVQVSPAPGHTGRLPFWTGDGLGRPYELGKALGAFRREAKSSLDE
SLDERARTNLLQYLEEQEEATGILPDEKTLVLERFTDELGDWRVVLHTPFGKGVNAAWAL
ATGWRVAQETGMDAQAVAGDDGIVLRLPQGDKEPDGAIFQFDADEIADIVTEQVGNSALF
ASRFRECAARALLLPRRNPGKRAPLWQQRQRAEQLLDVARNYPSFPIILETVRECLQDVY
DLPALQEVMRDVNTRRVRIAEVTTDQPSPFASSLLFNYTGAFMYEGDTPLAEKRAAALSL
DPSLLAKLLGTVELRELLDGDIIAEVDASLRRLGRAETSEQFADTLRIVGPVPIDELRLH
TAVPLESLEQALGARMMRVRIGGREHVAQVLDAPLLRDGLGVPVPPGVAAQVQTIPDALA
QLVGRWVRTRGPFTLRDLADAFGLAVGAAHAALQPLVDKDKVIPGRYRQGIEEEEYVAAE
VLRIIRSRSLAAARAQTRPVSQSAYGRFLPAWSNVAPVRVTPALRGADGVYSVLEQLAGV
RLPASAWESHILPARVGDYSPVMLDELTASGEVTIVGAGKAGARDPWIMLLPADYAAQLM
PQVDEPLLSLTQSQVMEKVRRGGGFLFSDLLEPTTTTEELREAMWDLVEAGFLAPDSFAP
IRARLAGGKTAHRARRRPSRSRVRSGRTSFAASVPPDMVGRWSLTPTPDDDATRRSVALG
ESLLDRYGVVTRGSVVAEDILGGFALAYKTLSGFEASGKAMRGYLVEGLGASQFSTPATI
DRLRGHQDSDDVVGWPSGAREPHVHVLAATDPANPYGAGLPWPAQGPTRSAGAMVVLIDG
LLAAHVTRGGKTMTTFFDTFPDGVGDPMPLVVGALTDAVRAGRMQPLSVEKLDGGPAYSL
KEYGATATHKGAKIGGRASAPPKRRGRSVAEALGELDGGEGAGPTFDD
NT seq 4647 nt   +upstreamnt  +downstreamnt
atgaacgcgccgatcctcagccgcttccacccgcaggtggcccagtggttcggggacgtc
ttcgccgcgccgaccgcggtgcaggagcaggcgtggcgcgcaatctccgacggcgaaaac
gcgctggtggtcgcgcccacgggctccggtaagacgctggcggcgtttctgtggtcgctg
aactcgctggtggagcgcgccgggcagcaagccttgcctatcgacggcgcgaacagctcc
acccacggcggcgtgaaagtcctctacatctcgcccctgaaggcgctgggcgtagacgtg
gagaacaacctgcgcgcgccgctggccggcatcgcgcgggtggcgcagaagctgggccgc
gacatgcccgacatctcggtcggggtgcgctccggcgacaccccgcagtccgagcgcaac
cggcaggtgcgcaagcccccggacatccttatcaccacgccggagtcgctgtacctcatg
ctcacctcgaaggcggcgggcattttgcggacggtggacacggtcatcgtggacgagatc
cacgccctggccggcacgaagcgcggcgtgcacctttcgctctcgctggagcggctgcgg
cggctggcgggggacttccagcgcatcggcctgtcggccacggtgcgcccgatagaggcg
gtggccaacttcctcgggccgacaacgaccatcatcaacccgcccgcggaaaagcgctgg
cacctggacgtgcgggtgccggtggacgacatgagtgacctgcccgtgccggaggacgcc
tccacgatcggcgacgcggtcttcgacgacgcggtgttcgacgacgcgctggaagaagcg
gagccagtccagccgccgggcgcggtgaactccatctggccgcacatcgagcgttccatc
tacgacgaggtgatggcgcaccgctccaccatcgtgttcgtgaactcgcgtcgcaccgcc
gagcggctgaccagccagctcaacgaactctgggcgaaggagcacgacccggaggcgctg
tcgcctacgacgcggcgcccgccggcgcagctgatgaagtcggtcgacaccgccggccac
gccgcgaacgtgatcgcgcgggcccaccacggctcagtgtccaaagacgagcgcgcccag
accgaaaccatgctgaaagagggcaccctgcgcgcggtggtgtccacctcctcgctggag
ctgggcatcgacatgggcgcggtcgacctggtcatccaggtggagtcgccgccgtcggtg
gcctccgggctgcagcgcgtggggcgcgccgggcacaccgtgggcgcggtctcggagggc
acgttctacccgaagcaccgctccgacctggtgcaaacggcggtgacggtgccgcggatg
cgcgagggcctcatcgaggagctgcacaccccgcgcagcccgctcgacgtgctggcgcag
cagaccgtggcggcggtggcggtggaggacctggacgtcgacgagtggtacgacacggtg
cgccgcgcctggccgtaccgggacctggcgcgcgaggtgttcgactcggtgatcgacctg
gtcatcggcatctacccgtccacggacttcgcggaactgcgcccgcgcgccatcctcgag
ggctcggtgctgaaggcgaggcccggcgcccaacgggtcgccgtcaccaacgccggcacc
atcccggaccgagggatgttcggcgtgttcttgctcgcaggcgccgaggacaaggccccc
cgccgcgtcggagagctcgacgaggaaatggtctacgagtcccgcgtcggcgacgtgttc
accctcggcgcctccagctggcgcatcgagaacatcacccgcgaccaggtgcaggtctca
cccgcgccggggcataccggccggctgccgttctggaccggcgacgggctgggcaggccc
tacgagctgggcaaggcgctgggggcgtttcgtcgagaagcaaaaagctccctggatgag
agcctggacgagcgggcgcggaccaacctgctgcaatacctcgaggagcaggaggaggcc
accggcatcctgccggacgagaagacgctggtgctcgagcggttcaccgacgagctgggg
gattggcgcgtggtgctgcacacccccttcggcaagggggtcaacgcggcgtgggcgctg
gccaccgggtggcgggtcgcgcaggagactggcatggacgcccaggcggtcgcgggcgac
gacggcatagtgctgcgcctgccgcagggcgacaaggagccggacggggcgatcttccaa
ttcgacgccgacgagatcgccgacatcgtcaccgaacaggtgggcaactccgccctgttc
gcctcgcggttccgcgagtgcgccgcccgcgccctgctgctgccgcgccgcaaccccggg
aagcgcgcgccgctgtggcagcagcgccagcgcgccgagcagcttctggatgtggcccgc
aactacccgagctttccgatcattctcgagacggtgcgcgagtgcctccaggacgtctac
gacctgcccgccctgcaggaggtcatgcgggatgtgaacacgcgccgggtgcgcatcgcc
gaggtgaccacggaccagccgagccccttcgcctcgtcgctgctgttcaactacaccggc
gcgttcatgtacgaaggcgacaccccgctcgcggagaagcgggccgcggcgctgtcgctg
gacccgtcgctgctggccaagctgctcggcaccgttgagctgcgggaactcttggacggc
gacattattgcggaggtggacgcgtcgcttcgccggctggggcgcgccgagacctcggag
cagttcgccgacaccctgcgcatcgtggggcccgtgcctatcgacgagctccgcctccac
acagctgttcccctcgagtccttggagcaggccttgggcgcgcgcatgatgcgggtgcgc
atcggcgggcgggagcacgtcgcccaggtgctggacgcgccgctgcttcgcgacggcctc
ggcgtgcccgtcccgcccggcgtcgccgcccaagtgcagaccatccccgacgccctggcc
cagctggtcggccgctgggtgcgcacccgcgggccgttcaccctgcgcgacctggccgac
gccttcggcctggcggtcggcgcggcgcacgcggcgctgcagccgctggtggacaaggac
aaggtcatcccgggccgctaccggcagggtattgaagaagaggaatacgtcgcggctgag
gtgctgcggatcatccggtcgcgctcgctggcggcggcgcgcgcccagacgcgcccggtg
tcgcagtccgcctacgggcgcttcctgcccgcgtggtcgaacgtcgccccggtaagggtc
acgccggcgctgcgcggggcggacggggtctactcggtgctggagcagctcgccggggtg
cggctgccggccagcgcgtgggagtcccacatcctgccggcccgggtgggcgactactcg
ccggtgatgctcgacgagctcaccgcttcgggggaggtcaccatcgtcggcgccggcaag
gcgggcgcgcgcgacccgtggatcatgctgctgccggcggactacgccgcccagctcatg
ccgcaggtcgacgagccgctgctgtcgttgacccagtcccaggtgatggagaaggtgcgc
cgcgggggcgggttcttgttcagcgacctcctcgagcccacaaccacgaccgaggagctg
cgcgaggcgatgtgggacctggtcgaggccgggtttttggcccccgactcgttcgcgccg
atccgggcgcggctcgccgggggcaagacggcgcacagggctcgccggaggccgtcgaga
agcagggtgcgctcggggcggacctcgttcgcggcaagcgtgccaccggacatggtgggg
cggtggtcgctgacgccgacgcccgacgacgacgcgacgcggcggtcggtcgccttgggg
gagagcctgctggaccgctacggggtggtcacccgcggctcggtggtcgccgaggacatc
ctcggcgggttcgcgctcgcgtacaagaccctgtccgggttcgaggcgtccggcaaggcg
atgcgcggctacctggtggaggggctcggggcatcgcagttttccaccccggcgaccatc
gaccggctgcgtggtcaccaggattccgacgacgtggtcggctggccctcgggcgcccgg
gagccgcacgtgcacgtgctggcggcgacggacccggcgaacccctacggggcggggctg
ccgtggccggcgcaggggccgacccgctcggccggggcgatggtggtgttgatcgatggg
ctcctggctgcccacgtcacccgcggcgggaagaccatgaccacctttttcgacacgttt
ccggacggggtcggcgacccgatgccgctggtggtcggcgcgctcacggacgcggtgcgg
gcgggccggatgcagccgctgagcgtggagaagctcgacggcgggccggcgtattcgctg
aaggagtacggggcgacggcgacccacaagggcgcgaagatcggcgggcgtgcctcggcg
cccccgaagcggcgcggccgcagcgtggcggaggcgctgggggagctcgacggcggcgaa
ggtgccggaccaaccttcgacgactaa

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