Corynebacterium afermentans subsp. lipophilum: CAFEL_04440
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Entry
CAFEL_04440 CDS
T09361
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cafe
Corynebacterium afermentans subsp. lipophilum
Pathway
cafe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cafe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAFEL_04440 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cafe03019
]
CAFEL_04440 (deaD)
03009 Ribosome biogenesis [BR:
cafe03009
]
CAFEL_04440 (deaD)
Enzymes [BR:
cafe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CAFEL_04440 (deaD)
Messenger RNA biogenesis [BR:
cafe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CAFEL_04440 (deaD)
Ribosome biogenesis [BR:
cafe03009
]
Prokaryotic type
rRNA helicases
CAFEL_04440 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
adh_short
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WJY58665
LinkDB
All DBs
Position
920687..922768
Genome browser
AA seq
693 aa
AA seq
DB search
MAYAEPTMSISENATGGENGPDMNESENQNNPQDVAAEIVEAVVEDTRDAGVSEETGAAD
TVAIENDNDVLKLNDEPSAEPAAEPKKLENGFETLGLPDQVIEAVKRVGFEQPSPIQAQT
IPLLMDGRDVVGLAQTGTGKTAAFALPVLSQIDPEKRYPQALVLAPTRELALQVSDSFQS
FADHIGGVSILPIYGGQAYGIQLSGLRRGAQVIVGTPGRVIDHLEKGSLDISNLDFLVLD
EADEMLNMGFQEDVERILEDTPDSKQVALFSATMPNAIRRISRDYLNDPEEVTVKSETRT
NTNITQRYLFTAHRNKLDAITRILEVTEFEAMIVFVRTKNETEELAEKLRARGFSAAAIN
GDIAQQQRERTVDQLRDGRLDILVATDVAARGLDVERISHVLNYDIPNDTESYVHRIGRT
GRAGRSGEAILFVTPRERRMLRSIERVTNATIEEMDLPTVDEVNESRKAKFMDSITESLE
ATDLQIFKTMVREYSAANNVPMDDIAAALATQALAGDEFLMKEPPRDKRDRRDRDRFDRD
DRRGRGRDRFDRDDRGDRGRGRRFDDSGNFDTYRLDVGKRQHVRPGAIVGALANEGGLNS
KDFGRITIGGDFTLVELPKNLDQAVLDRLVDTRISGQLINIQRDHGAPPRDRGGRGRGRG
GRGGYRGGRGRDDRGGYRGGRGRGRDDRGGRWD
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacgctgagcccacgatgagcatttccgaaaacgccaccggcggcgagaatggg
ccggacatgaatgagtcggaaaatcagaacaacccgcaggatgtcgcggccgagatcgtt
gaggccgtagtagaggacaccagggatgcgggggtttctgaggagaccggcgccgcggac
accgtggccattgaaaacgacaatgatgtgctgaagcttaacgacgagccttcggccgaa
cccgccgccgagcccaagaagctcgagaacggcttcgaaaccctcggcctgcccgaccag
gtcatcgaggcggtcaagcgcgtcggctttgagcagccgtcgccgatccaggcgcagacc
atcccgctgcttatggacggccgcgacgtggtcggcctcgcgcagacgggtaccggcaag
accgcggcgttcgcgctgccggtgctgtcccagatcgacccggagaagcgctacccgcag
gcgctggtgctcgcgccgacgcgtgagctggcgctgcaggtctccgactccttccagagc
ttcgccgaccacatcggcggcgtgagcatcctgccgatctacggcggccaggcctacggc
atccagctgtccgggctgcgccgcggcgcccaggtcatcgtgggcaccccgggacgagtc
atcgaccacttggagaaggggtcactggacatctccaacctggacttcctcgttctggac
gaggccgacgagatgctcaacatgggcttccaggaagacgtcgagcgcatcctggaagac
accccggactccaagcaggtggcgctgttctcggcgacgatgccgaacgcgatccgccgc
atctcccgcgactacttgaacgacccggaagaggtcaccgtcaagtcggagacgcgcacc
aacaccaacatcacgcagcgctacctgttcacggcgcaccgcaacaagctcgacgcaatc
acccgcatcctcgaggtgaccgagttcgaggcgatgatcgtgttcgtgcgcaccaagaat
gagaccgaggagctggctgaaaaactgcgcgcccgcgggttctccgccgccgccatcaac
ggcgacatcgcccagcagcagcgcgagcgcaccgtggaccagctgcgcgacggacgcctg
gacatcctcgtggccaccgacgtcgccgcccgcggcctggacgtcgagcgcatctcgcac
gtgctcaactacgacatccccaacgacacggagtcctacgtccaccgcatcggccgcacc
gggcgtgcggggcgttccggcgaggcgattctgtttgtcaccccgcgcgagcgccgtatg
ctgcgctccatcgagcgcgtgaccaacgcgaccatcgaagagatggacctgcccaccgtg
gatgaggtcaacgagtcgcgcaaggccaagttcatggactccatcaccgagtcgctcgaa
gccaccgacctgcagatcttcaagaccatggtgcgcgagtactccgccgcgaacaacgtg
cctatggacgacatcgccgccgccctggccacccaggccctggccggcgacgagttcctg
atgaaggagccgccgcgcgacaagcgcgaccgacgcgaccgcgaccgcttcgaccgcgac
gaccgccgcgggcgcggacgcgaccgcttcgaccgcgacgatcgcggggatcggggccgc
ggccgccgcttcgacgacagcggcaacttcgacacctaccgcctggacgtgggcaagcgc
cagcacgtccgcccgggtgcgatcgtcggtgcgctggccaacgagggcgggctgaactcc
aaggacttcggccgcatcaccatcggcggcgacttcaccctggtggagttgccgaagaac
ctggaccaggccgtgctggaccgcctggtggacacccgcatctccggccagctgatcaac
atccagcgcgaccacggcgcacccccgcgtgatcgcggcgggcgtggccgcggccgcggc
ggccggggaggctaccgcggcgggcgcggacgcgacgaccgtggcggttaccgcggcgga
cgtggccgtggccgcgacgacagaggcggccgctgggattaa
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