Corynebacterium afermentans subsp. lipophilum: CAFEL_04565
Help
Entry
CAFEL_04565 CDS
T09361
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
cafe
Corynebacterium afermentans subsp. lipophilum
Pathway
cafe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cafe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAFEL_04565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cafe03021
]
CAFEL_04565
03019 Messenger RNA biogenesis [BR:
cafe03019
]
CAFEL_04565
Transcription machinery [BR:
cafe03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CAFEL_04565
Messenger RNA biogenesis [BR:
cafe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CAFEL_04565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
Spore_III_AA
NACHT
S1CSD-TOTE-2
MDM1
Motif
Other DBs
NCBI-ProteinID:
WJY58689
LinkDB
All DBs
Position
952054..953850
Genome browser
AA seq
598 aa
AA seq
DB search
MTETGTAADLAAMKIPELRKLAAEKGLKGVSGLRKGELIQAIVTGQVPRKAAAEKAAPAE
KSAAEKAAPAEKVEKPSQAEKQQPSDDDESRGASRSAARRARRNRARSQHDEQQGGDNRE
NRDNRDNNADGDNEQNHGSDHGNNDRGNDRGGRNNHGNHGNHGGNNDDHHGGGRRGRRGR
RNRNRNRDHNHGGGNNANNDNQNFNPEDLQEVAGIADVQDNGSAFIRTTGYRQSNADVYV
PQKLVRQSGLRSGDAVTGQVRANGQSHSQGNGRNRRSYNQVVRVDSINGQTTEAAKGRKE
FHKLTPLYPNRRLRLETEPKILTTRVIDLVMPIGKGQRALIVSPPKAGKTTILQNIANAI
ATNNPECYLMVVLVDERPEEVTDMQRSVNGEVIASTFDRPPSEHTAVAELAIERAKRLVE
MGQDVVVLLDSITRLGRAYNNSSPASGRILSGGVDSNALYPPKRFLGAARNIEEGGSLTI
IATAMVETGSAGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKDELLMSPE
EARVMHKLRRILSALDPQQSIDMLIKQLKKTKTNGEFLIGVANSAPMAQTENDEEDYS
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgaaaccggcaccgcggccgacctcgccgcaatgaagattccggagctgcgcaag
ctcgccgccgaaaagggacttaagggggtctccgggctccgcaagggggaactcatccag
gccatcgttaccgggcaggtgccccgcaaggccgccgccgagaaggctgcgccggcggag
aagtctgccgccgagaaggcagcgccggcggaaaaggtcgagaagccgagccaggccgag
aagcagcagcctagcgacgacgacgagtcccgcggggcatcgcgctcggccgcacgtcgc
gcccgccgcaaccgtgcacgctcgcagcacgacgagcagcagggcggcgacaaccgcgaa
aaccgcgacaaccgtgacaacaatgccgacggcgataacgagcagaaccacggcagcgac
cacggcaacaacgaccgtggcaacgaccggggcggccgcaacaaccacggcaaccatggc
aaccacggcggcaacaacgacgaccaccacggcgggggccgccgcggccgccgcgggcgc
cgcaaccgtaatcgcaaccgggaccacaaccacggcggcggaaacaacgccaacaacgac
aaccagaacttcaacccggaggacctgcaggaggtcgccggtatcgcggacgtgcaggac
aacggttcggcgttcatccgcaccaccggctaccgccagtccaacgcggacgtctatgtg
ccacagaagctcgtgcgccagtcgggcctgcgctccggcgacgcggtgacgggtcaggtc
cgcgccaacgggcagtcccactcgcagggcaacggccgtaaccgccgcagctacaaccag
gttgtgcgggtcgattccatcaacggccagaccacggaggcggcgaagggccgcaaggag
ttccacaagctcactccgttgtacccgaaccgccgtctgcgcctggaaactgagccgaag
atcctcaccacccgcgtgatcgacctggtcatgccgattggtaagggccagcgcgcgctg
atcgtctccccgccgaaggccggtaagacgacgattctgcagaacatcgccaacgcgatc
gccaccaacaacccggagtgctacctcatggtggtgctggtggatgagcgtccggaagaa
gtcacggacatgcagcgcagcgtcaacggcgaagtcattgcctccacgttcgaccgtccg
ccgtcagagcacaccgctgtggccgagcttgccatcgagcgcgcgaagcgcctggtggag
atgggccaggacgtggtggtcctgctggattccatcacccgcctgggccgcgcctacaac
aactcctccccggcgtccggccgcatcctctccggcggtgtggactccaacgcgctgtac
ccgccgaagcgcttcctgggcgctgcccgcaacatcgaggagggcggttcgctgacgatc
atcgccaccgcgatggtggagaccggctcggctggcgacaccgtgatcttcgaggagttc
aagggcaccggcaacgccgagctcaagctggatcgcaagatcgcggagcgccgcgtgttc
ccggctgtggacgtcaacccctccggcacccgcaaggacgagctgctgatgagcccggag
gaggcgcgcgtgatgcacaagctgcgccgcatcctctccgcgctggatccgcagcagtcc
attgacatgctgattaagcagctgaagaagacgaagaccaacggcgagttcctgatcggc
gtggccaactctgcaccgatggcgcagacggaaaacgacgaggaggactactcctaa
DBGET
integrated database retrieval system
