Corynebacterium afermentans subsp. lipophilum: CAFEL_05135
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Entry
CAFEL_05135 CDS
T09361
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
cafe
Corynebacterium afermentans subsp. lipophilum
Pathway
cafe03030
DNA replication
cafe03410
Base excision repair
cafe03420
Nucleotide excision repair
cafe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cafe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CAFEL_05135 (polA)
03410 Base excision repair
CAFEL_05135 (polA)
03420 Nucleotide excision repair
CAFEL_05135 (polA)
03440 Homologous recombination
CAFEL_05135 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cafe03032
]
CAFEL_05135 (polA)
03400 DNA repair and recombination proteins [BR:
cafe03400
]
CAFEL_05135 (polA)
Enzymes [BR:
cafe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CAFEL_05135 (polA)
DNA replication proteins [BR:
cafe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CAFEL_05135 (polA)
DNA repair and recombination proteins [BR:
cafe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
CAFEL_05135 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CAFEL_05135 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
HHH_2
Motif
Other DBs
NCBI-ProteinID:
WJY58799
LinkDB
All DBs
Position
1071369..1074014
Genome browser
AA seq
881 aa
AA seq
DB search
MTAKKRLLLIDGHSMAFRAFYALPAENFSTSGGQHTNAVYGFLSMFANILADEKPTHAAV
AFDVGRKTFRTERFPEYKAQRESAPPEFKGQVPIIEDVLGDLGITTLSKENFEADDIVAT
LVTQARAEGDFEIVLVSGDRDYIQLVDGTTTLMYPTRGVSTMTRFTPEEVEKKYGLTPAQ
YPDFAALRGDPSDNLPSVPKVGEKTATKWITQYGSLEGLIESADELKGVAANNFRERIDQ
VRLNRELTQMVTDVELPVAPNDLELKPADVTQVASRFDDLEFGVNLRERVLAAVPTDGAA
PETETVELEDVTIDDEPLDTWLNSRQADGLAVYVSGNATPGQGDVVALAIVDKQRHGVSK
LAADLSAEEDAAVKRWLESDAPKYMHEAKAAYHMLRGRGIELAGIAHDTAIAAYLLRPGQ
RTYALEDIYQRHLQRQLNVGSDQMSLLGDTADVDAAAAILELSAELTKELREIDSYELYA
DLELPLVTVLAEMEHTGIAVDLDVLENQCKELTLKVEQIEQEARQLVDEPSLNLSSPKQL
SAVLFDKLELPKTKKTKTGYSTAAGEIEALAEKNPHPFLDHLLAHREHQKLKSTIEGLIK
TVQPDERIHTTFNQTVASTGRLSSAEPNLQNIPVRTEAGRAIRSAFVVGEGYECLLTADY
SQIEMRVMAHLSQDEGLIEAYRAGEDLHNFVGSRVFDVPIDQVTPELRRRVKAMSYGLVY
GLSAYGLSNQLSISAGEAKDIMASYFERFGGVKRYLDEVVEQARRDGYTSTVFGRRRYLP
ELNSDNRVARENAERAALNAPIQGTAADIIKVAMLRVDAALEGKESRVLLQVHDELVVEI
APGELDEVRGIVEREMDDAIELLVPLEVSAGTGANWDAAAH
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
gtgactgcaaagaaacgcttgttgcttatcgacggccactcgatggccttccgcgccttc
tacgcgctgcccgcggagaacttctccacctccggcggccagcacacgaatgcggtctac
gggtttttatccatgttcgccaacatcctggcggacgagaaaccgacgcacgccgccgtc
gccttcgatgtgggccgtaagacgttccgcacggagcgtttcccggagtacaaggcgcag
cgcgagtccgcgccgccggagttcaaagggcaggtgccgatcatcgaggacgtgctgggc
gacctcggcatcaccaccttgagcaaggagaacttcgaagcggacgacatcgtcgccacg
ctggtgacccaggcgcgcgcggagggcgacttcgagatcgtgctggtcagcggcgaccgc
gactacatccagcttgtggacggcaccacaaccctgatgtatcccacccgcggcgtgtcc
actatgacccggtttacgcctgaggaagtggagaaaaagtacgggctcacgccggcgcag
tacccggacttcgcggcgctgcgcggggatccgtcggacaacctgcccagtgtgccgaaa
gtgggggagaagaccgccaccaagtggatcacgcagtacggcagcctggaagggctcatc
gaaagcgccgacgagctcaagggcgtggccgcgaataacttccgcgagcgcatcgaccag
gtgcgcctcaaccgcgagctcacgcagatggtcaccgacgtcgagctgccggtcgccccg
aacgatctggagctcaagccggcggacgtcacccaagtcgcctcccgcttcgacgacctc
gagttcggcgtcaacctccgcgagcgtgttctcgccgccgtgcctaccgacggcgccgcg
cccgagacagagactgtcgagcttgaagacgtcaccatcgacgacgagccgctggacacc
tggctcaatagccgtcaagccgacggtcttgccgtctatgtctccggcaatgccacgccc
gggcagggtgatgtggtggcgttggcgatcgtcgataagcaaaggcacggtgtgtctaag
ctcgccgcggatttgagcgccgaggaggacgccgcggtaaagcggtggctcgagtcggac
gcgccgaagtacatgcacgaggcgaaggcggcgtaccacatgctgcgcggtcgcggcatc
gagctcgcaggcatcgcgcacgacaccgcgattgccgcctacctgctgagacccggacag
cgcacctacgcgctggaggacatctaccagcgccatctgcagcgccagctcaacgtcggc
tcggatcagatgagcctgctcggcgataccgcggacgtggatgcggccgcggcgatcttg
gagctgtccgcggagctgacgaaggagctgcgcgagatcgactcctacgagctctacgcg
gacctggagctgccgcttgtcaccgtgctcgccgagatggagcacaccggcatcgcggtg
gatctggacgtgctggaaaaccagtgcaaggagctcacgctgaaggtggagcagattgag
caggaggcgcgccagcttgtggacgagccttcgctgaacctgtcttcgccgaagcagctg
tcggcagtgctctttgacaaactggagctgccgaagacgaagaagaccaagaccgggtac
tcaaccgccgcaggtgagatcgaggcactggcggagaagaacccgcacccgtttttggac
catctgctggcgcaccgcgagcaccagaaactcaagtccactatcgagggcctgattaag
acggtgcagccggatgagcgcatccacaccacgttcaaccagacggtggcgtccacaggc
cggctcagctccgcggagccgaacctgcagaacatcccggtgcgcaccgaggcgggccgc
gcgatccgttccgcgtttgtggtgggcgaaggctacgagtgcctgctcaccgcggactac
tcgcagattgagatgcgcgtgatggcgcacttaagccaggacgagggcctgatcgaggcg
tatagggcaggggaggacctgcacaactttgtcggctcgcgcgtgttcgacgtgcccatc
gaccaggtcaccccggagctgcgccgccgcgtcaaagcgatgtcctacggtctggtctat
ggcttgtcggcgtacgggttgtccaaccagttgtctatctccgccggcgaggcgaaagac
attatggccagctacttcgagcgcttcggcggcgtgaagcgctacctggatgaggtagtg
gagcaagcgcgtcgcgacggctacacgtccaccgtgttcggccgccgccgctacctgccg
gaactgaacagcgacaaccgggtagcacgcgagaacgccgagcgggccgccctgaacgcg
ccgatccagggcacggccgccgacatcatcaaggtggccatgctgcgcgtggacgcggcg
ttggaaggcaaagagtcccgcgtgctgctccaggtccacgacgagcttgttgtcgaaatc
gccccgggcgagctggacgaggtgcgcgggattgtggagcgcgagatggacgacgctatc
gagctgctcgtcccgctggaggtctccgcgggcaccggcgccaactgggacgcggccgcg
cactag
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