Corynebacterium afermentans subsp. lipophilum: CAFEL_06810
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Entry
CAFEL_06810 CDS
T09361
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
cafe
Corynebacterium afermentans subsp. lipophilum
Brite
KEGG Orthology (KO) [BR:
cafe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cafe03016
]
CAFEL_06810 (truB)
Enzymes [BR:
cafe01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
CAFEL_06810 (truB)
Transfer RNA biogenesis [BR:
cafe03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
CAFEL_06810 (truB)
Prokaryotic type
CAFEL_06810 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C
TruB_C_2
DKCLD
PseudoU_synth_2
Motif
Other DBs
NCBI-ProteinID:
WJY59122
LinkDB
All DBs
Position
1426187..1427080
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AA seq
297 aa
AA seq
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MNDPLATSGIVVVDKPAGMTSHDVVARLRRFFGTRKVGHAGTLDPMATGVLVAGIERGTK
LLAHLVAEDKVYETTIRLGASTTTDDAEGATVDTHDASGITDEAIRAEVAKLTGTIMQVP
SKVSAIKIDGRRAHELVRAGEEVDIPAREVTIHSFDLGEIRRDGEFVDVDARVHCSSGTY
IRSLGRDLGAALGVGGHLIALRRSRVGAFSLTDARTLDQLENSAELSLSLDDALIRVWPV
LYITADEYDALAMGKWLEPRGLKGVHAAVGPDGRAVALVKEKGKRLATVFVARPSTL
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgaacgatcccctcgccacttccggaatcgtcgtcgtggacaagcccgctggcatgacc
agccacgacgttgtcgcacgcctgcgccgcttcttcggcacccgcaaagtcggccacgcg
ggcacgctcgaccccatggcaaccggtgtgctggtggcgggcatcgagcgcggcacgaag
cttctggcccacctcgtggccgaggacaaggtgtacgaaaccaccatccgcctgggcgcg
tcgacgacaacggatgatgccgaaggcgcgaccgtcgatacgcatgatgcttccgggatc
acagatgaggcgatccgcgcggaggtggcaaagctgaccggcacgatcatgcaggtgccg
tcgaaggtctccgccatcaagatcgacgggcggcgcgcgcatgagctcgtgcgcgccggc
gaggaggtggacatccccgcgcgcgaggtgaccatccactctttcgacctcggcgagatc
cgccgcgacggcgagttcgtggacgtcgatgcgcgcgtgcactgctcttccggcacctac
atccgctcgctcgggcgcgacctgggtgcggccttaggtgtcggggggcatttgattgcc
ttacgacgctcccgtgtcggcgcattctccctcaccgatgcacgcaccctggaccagctc
gagaactccgccgagctgtcgctgagcctggacgacgccttgattcgcgtgtggccggtc
ctctacatcacggcagacgaatacgatgccctggccatgggcaagtggttggagccgcgc
gggctcaagggcgtccacgcggcggtggggccggacgggcgcgcggtggcgcttgtgaag
gagaagggcaagcgcctggccacagtgttcgtcgcacgcccctcgacgctgtag
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