Corynebacterium afermentans subsp. lipophilum: CAFEL_07305
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Entry
CAFEL_07305 CDS
T09361
Symbol
dnaE2
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cafe
Corynebacterium afermentans subsp. lipophilum
Pathway
cafe03030
DNA replication
cafe03430
Mismatch repair
cafe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cafe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CAFEL_07305 (dnaE2)
03430 Mismatch repair
CAFEL_07305 (dnaE2)
03440 Homologous recombination
CAFEL_07305 (dnaE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cafe03032
]
CAFEL_07305 (dnaE2)
03400 DNA repair and recombination proteins [BR:
cafe03400
]
CAFEL_07305 (dnaE2)
Enzymes [BR:
cafe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CAFEL_07305 (dnaE2)
DNA replication proteins [BR:
cafe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CAFEL_07305 (dnaE2)
DNA repair and recombination proteins [BR:
cafe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CAFEL_07305 (dnaE2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
WJY59220
LinkDB
All DBs
Position
complement(1532678..1536238)
Genome browser
AA seq
1186 aa
AA seq
DB search
MAKKSSFVHLHNHTEFSMLDGMAKVDMLADEVVRQGMPAVGMTDHGNMFGSNAFYRRMVD
AGVKPIIGIEAYMAPESRFNKKRVLWGTPDQKRDDVSASGAYLHQTMLAENATGLRNLFK
LSSLASYEGQLGKWPRMDAELIAEHADGIIATTGCPSGDVQTRLRLGQYDAALEAAAMWQ
DIYGKDNYFLELMDHGLHIERRVREDLLRIGQALDLPPLVTNDCHYVLESQAPSHEAMLC
VQTGKTLLDPDRFKFDGSGYYIKSAEQMRELWDSTVPDGCDNTLWIAERVGDYGELWEEH
PHDRMPIADVPEGHTPTTWLREEVLRGLKERFDGGDVPEEYLTRASYEIDVIDMKGYPSY
FLIVAELIKHAREIGIRVGPGRGSAAGSLVAYALTITNIDPMEHGLLFERFLNPERPSAP
DIDIDFDDRRRGEMITYAAERWGEDKIAQVITFGTVKTKQAIKDSAKVNFGQPGFQMADR
INGALPPAIMAKDIPLSGITDPEHERYNEAAEVRSLIETDPDVAKIYETARGLEGVVRQA
GVHACAVIMASVPLMEHIPMWKRPADGAIITGWDYPACEAIGLLKMDFLGLRNLTVLGDA
LENVKKNRGETIDLEALDTDNQAVYELLSRGDTLGVFQLDSGGMQELLKRMKPTGFNDIV
ASLALYRPGPMGVNAHWDYADRKNGRKPITPIHPELEEPLKEILDETYGLIVYQEQIMNI
SQKVANYTAGQADGFRKAMGKKKPEVLAKQYETFSAGMFSNGYSKEAVDALWGTIEPFAS
YAFNKSHAAGYALVSYWTAYMKANYAAEYMAALLTSVGDKKDKSAIYLSDCRHLGISVLQ
PDINESEENFMAVGEDIRYGLAAVRNVGVEVVESIKKTRKEKGSFTSFSDYLDKIELAAC
NKRITESLIKAGAFDSLEHPRKGLMLIQEDAVDSVLATKKAADKGQFDLFAGFGGEDGAD
NSAFTIEVPDDEWDRKHKLALEREMLGLYVSGHPLDGFEEAIDAQTDTQLTTILSGEMRN
GAEVTIGGLISTVDRRFSKKDGSPWAIVTIEDHHGAQVDVLLFNKVYALVAPQIVEDNII
LVKAHVSIRDDRMSLFGDDVKVPELGPGNGAGLPLRLTMRTDQCTAENIAKLKGVLVNNA
GDSDVYLNLVNGEHSQLMILGDHLRVNRSASLMGDLKATLGAGILG
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggccaaaaaatcctccttcgtgcacctgcataaccacaccgagttctccatgttggac
ggcatggcgaaggtggacatgctcgccgacgaagttgtgcgccagggcatgcccgcggtg
ggcatgaccgaccacggcaacatgttcggttcgaacgcgttctaccgccgcatggtggat
gccggggtcaagccgatcatcggcatcgaggcgtacatggccccggagtcccgcttcaac
aaaaagcgcgtgctctggggcaccccggaccagaagcgtgacgacgtttccgcgtccggc
gcgtacttgcaccagacgatgttggcggaaaatgcgacaggcctgcgcaacctgttcaag
ctgtcgtcgctggcgtcctacgagggccagctgggcaagtggccgcgcatggacgcggag
ctgatcgccgagcacgcggacggcatcatcgccaccacgggctgcccgtcgggcgatgtg
cagacgcgccttcgcctcggccagtacgacgccgcgctcgaggcggcggcgatgtggcag
gacatttacggcaaggacaactatttcctggagttgatggaccacggcctgcacatcgag
cggcgggtgcgcgaggaccttctgcgcatcggccaggcgctggatctgccgccgctggtg
accaacgactgccactacgtgctcgaatctcaggcgccgtcgcacgaggcgatgctgtgc
gtgcagaccggcaagacgctgcttgatccggaccgcttcaagttcgacggctccggctac
tacatcaagtccgcggaacagatgcgcgagctgtgggattccacggtgccggacggctgc
gacaacaccctgtggattgcggagcgcgtcggcgactacggcgagctgtgggaggagcac
ccgcacgaccgtatgccgatcgcggacgtgccggaggggcacacgccgacgacgtggctg
cgcgaagaggtattgcgcggtttgaaggagcgtttcgatggtggagacgtgccggaggaa
tacctgacgcgcgcgagctacgagatcgatgtcatcgacatgaagggctacccgtcctac
ttcctcatcgtggcggagctgatcaagcatgctcgcgagatcggcatccgcgtcggaccg
ggccgtggttctgcggcgggctccctggtcgcgtacgcgctgacgatcaccaacatcgac
ccgatggaacacggcctgctcttcgagcgattcttgaacccggagcgcccctccgcgccg
gatatcgatatcgacttcgatgaccgccgccgcggagaaatgatcacctacgccgcagag
cgctggggcgaagacaagatcgcccaggtgatcaccttcggcacggtgaagaccaagcag
gcgattaaggactcggccaaggtgaacttcggccagcccggcttccagatggcggaccgc
atcaacggcgcactgccgccggcgatcatggcgaaggacattccgctctctggcatcacc
gacccggagcacgagcgctacaacgaggccgcggaggtccgctcgctgattgagacggat
ccggacgtggccaagatctatgagacggcccgcggcctggaaggcgtggtcaggcaggca
ggcgtgcacgcgtgtgcggtgattatggcctcggtgccgctgatggagcatattccgatg
tggaagcgcccggcggacggcgcgatcatcaccggttgggactacccggcgtgcgaggcc
attggcctgctgaagatggactttctggggctgcgcaacctcacggtgctgggtgacgcg
ctggagaacgtgaagaaaaaccgcggcgaaaccatcgacctcgaggcactcgacaccgac
aaccaggcggtctacgagttgctctcgcgcggcgacaccctaggcgtgttccagctggac
tcgggcggcatgcaggagctgctcaagcgcatgaagccgaccggattcaacgatattgtc
gcctcgctggcgctgtaccgcccaggcccgatgggtgtgaacgcccactgggattacgcc
gaccgtaagaacgggcgcaagccgattacgccgatccacccggaactggaagaaccgctc
aaggagattctggatgagacctacggcctgatcgtctaccaagagcagatcatgaacatc
tcgcagaaagtggcgaactacacggcgggccaagcagacggcttccgcaaggccatgggt
aagaaaaagccggaggtgctggcgaagcagtacgagacgttttccgccggcatgttctcc
aacggctactccaaggaggccgtggatgcgctgtggggcacgatcgagccgttcgcctcc
tacgcgtttaacaagtcccacgccgcgggctacgcgctggtgtcctactggacggcgtac
atgaaggcgaactacgccgctgagtacatggcggcactgctgacctctgtgggcgacaag
aaagacaagtccgcgatctatctgtcggactgccgccacctgggcattagcgtgctgcag
ccggacatcaacgagtccgaagaaaacttcatggctgttggcgaagacatccgctacggg
cttgccgctgtgcgaaacgtcggcgtggaagtggtggagtccatcaagaaaaccaggaag
gaaaagggctctttcaccagcttctcggactacctggacaagatcgagttggcggcctgc
aacaagcgaatcacagaatcgctgatcaaagccggggcattcgactcgttggagcacccg
cgtaaggggctcatgctcatccaggaagacgccgtcgattccgttctggccacaaagaag
gcggcggacaaggggcagttcgacctcttcgccggtttcggcggggaagatggcgccgac
aactccgcgttcaccatcgaggtgcctgacgacgaatgggaccgcaaacataagctcgca
ctggaacgtgagatgctcggcctgtatgtctccggccacccgctcgacggtttcgaggag
gccatcgacgcgcagacggatacgcagctgaccaccatcctctccggagaaatgcgaaac
ggggcagaggtgaccatcggcgggctgatctccaccgtggaccgccgtttctccaagaag
gatggctccccgtgggcgatcgtgaccatcgaggaccaccatggcgcacaggtggatgtg
ctgctgtttaacaaggtgtacgcactggtcgcgcctcaaatcgtggaggacaacatcatt
ctggtcaaggcgcacgtttccatccgcgacgatcgcatgagcctgttcggcgatgacgtg
aaggtgccggagcttggccccggcaacggtgccgggctgccgctgaggttgaccatgcgc
acggatcagtgcacagcggagaatatcgccaaacttaaaggcgtactggtgaacaacgcc
ggcgattcggacgtctacctgaatctggtcaacggagaacacagccagctgatgattctg
ggtgaccacctgcgcgtgaaccgctcggccagcttgatgggcgacctcaaggcgacactc
ggcgccgggatcctgggctag
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