Chloroflexus aggregans: Cagg_0423
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Entry
Cagg_0423 CDS
T00824
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cag
Chloroflexus aggregans
Pathway
cag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cagg_0423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cag03019
]
Cagg_0423
03009 Ribosome biogenesis [BR:
cag03009
]
Cagg_0423
Enzymes [BR:
cag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cagg_0423
Messenger RNA biogenesis [BR:
cag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cagg_0423
Ribosome biogenesis [BR:
cag03009
]
Prokaryotic type
rRNA helicases
Cagg_0423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
Flavi_DEAD
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ACL23368
UniProt:
B8G3I5
LinkDB
All DBs
Position
complement(523780..525432)
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AA seq
550 aa
AA seq
DB search
MTTFAALGLSDALLHTLRELGYDEPTPIQAQAIPLLLAGRDVIAQAQTGTGKTAAFALPM
IEQVTDEPVVQALVLAPTRELAVQVAEAVHRYGRHRALRVLPIYGGQPIERQLRGLAQGV
QVVVGTPGRVLDHLRRGTLRFDHLRLVVLDEADEMLDMGFAEELEAILQLTPAERQTALF
SATLPPAVQSLTLRYTRQPVRVSIAAEQLTTPHIRQIYYEILARDKLDALCRVLDAEMPQ
LAIVFCRTRQEVDEIGERLQGRGYAAESLHGDLSQAVRDRVMRRFREGQLDVLVATDVAA
RGLDIAEVSHVINYDVPTDPESYVHRIGRTGRAGRAGVAITFITPRERRMLQTIERVTRT
RIERCQMPTLADVAARRRLALRDQLREAMQAPGLTSYMDLLDELTVEHDLRTLAAAALKL
LLNETETEQVDTITRLEPPRSEQVERGERSSRARRAAVDERPTRRESGMARIRLNLGRND
QIRPADIVGAIANEAGLSGRSIGAIEVQARMSLVDVPRRSVRQVLQALNRTTLRGQRVRA
VLVSEEVVVA
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgtttgctgcgttgggcctgagcgatgcacttctgcataccttgcgtgagctt
ggctacgacgaaccaactcccattcaggcgcaagccattcctttgttacttgccggtcgc
gatgtgatcgctcaggcccagaccggcaccgggaagacggcggcgtttgcgctgccgatg
attgaacaagtgaccgatgaaccggtcgtacaggcgctcgttttggcgccaactcgtgag
ctggcagtccaagtggccgaggctgtccatcgttatggccgccatcgcgcactccgggtg
ttgccgatctacggcggtcagccgattgagcggcagttgcgtggcttagctcagggtgta
caagttgtcgttgggacgccgggacgggtgctcgatcacttacgccgggggacgttgcgc
ttcgaccatctacgcctggttgtgctcgatgaagccgacgaaatgctcgatatgggtttt
gccgaggagcttgaggctattctgcaattgaccccggccgaacgccagacggctctgttc
tcggcgacgctgccgcccgctgtgcagagtctgaccctgcgctatacccgccaaccggtc
cgggtgagtattgctgccgaacaattgaccactccgcatatccgtcagatttattacgag
atcttggctcgtgataaactcgatgcgctctgccgcgtgctcgacgccgagatgccgcaa
ctggcgattgttttttgccggacccgccaagaggttgatgaaatcggtgaacggctgcaa
gggcgtggctatgctgccgagtcgctccacggcgatttgagccaggcggtgcgcgatcgc
gtcatgcggcgcttccgcgaggggcaactcgatgtgttggtggcaaccgatgtagcggca
cgtggtctcgatattgccgaagtgagccacgtgattaactacgatgtcccgaccgatcct
gaaagctatgttcaccggatcggtcgtaccgggcgtgccgggcgtgctggggtcgcgatc
acgttcattactccccgtgaacgccggatgcttcaaaccattgaacgggtgacgcgcacg
cggatcgagcgttgccagatgcccactttagccgatgtcgctgctcgtcgccgcctagca
ttgcgcgatcagttgcgtgaggcaatgcaggcccccggcctcacgagttatatggatctg
cttgacgagttgaccgttgaacacgatctgcgcacgttggctgctgcggcgctcaagctc
ttactcaacgagacggaaactgagcaggtagatacgattactcgcctcgaacctccccgc
tccgaacaggttgaacgtggtgagcgctcatcacgtgccaggcgtgcggctgttgatgaa
cgacctacccgtcgcgaaagcggtatggctcgcatccggcttaatctcggtcgaaacgat
cagattcggcctgccgatattgttggtgcgattgccaatgaagccggtttgtctgggcgg
agtattggtgctatcgaggttcaggcacggatgagccttgttgatgttccacgtcggtca
gtacgccaggtactgcaagctcttaatcgcacgacgttacgcggtcaacgggtgcgggcg
gtgttagtctcagaagaagtggttgtagcataa
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