Chloroflexus aggregans: Cagg_1306
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Entry
Cagg_1306 CDS
T00824
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cag
Chloroflexus aggregans
Brite
KEGG Orthology (KO) [BR:
cag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cag03016
]
Cagg_1306
Enzymes [BR:
cag01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Cagg_1306
Transfer RNA biogenesis [BR:
cag03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Cagg_1306
Prokaryotic type
tRNA splicing ligases
Cagg_1306
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
HTH_Rpn_C
Motif
Other DBs
NCBI-ProteinID:
ACL24214
UniProt:
B8G8F2
LinkDB
All DBs
Position
complement(1604653..1605972)
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AA seq
439 aa
AA seq
DB search
MKPAKLLADYTDHPSFRRICREAKQMLKEGMDVAMIRQAIAARYGTPPTELRLRDTPQPL
KIVGEHLVEPGAIEQIRMALRLPPAIRGALMPDAHQGYALPVGGVIAYDRAVAPYQVGVD
IGCRMHLSIFAELTPDDARRDRQLLLETLSKVTVFGIGSPKKPVADHPILTDSRWRATKL
LRELHELARVQIGTSGGGNHFAEIVIGEWLTNGQPFVGLLTHSGSRGVGARIANYYAELA
DRETAVIAKGIPRTYGWLSTEREAGQEYLLAMRLAGDFARANHEVIHARFARALGLKVTQ
VIENHHNFAWEQPDGTVIHRKGATPAEAGVLGIIPGSMATASYIVEGLGDKATLASAAHG
AGRRFSRAEARRTITPAMAAAVVREAGVLVRGLTVDESPLAYKDIESVMEVQIAAGLIRP
VARMRPLVVVMSGARGEDS
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctgccaaattgctggccgattacaccgatcatcccagctttcgcaggatatgt
cgtgaagcgaaacagatgctaaaagaggggatggatgtcgccatgattcggcaagcgatc
gcggctcgctacggtactccgccaacggagctgcggctccgcgataccccgcagccgttg
aaaattgtcggtgagcatctggtggagccgggagccattgagcagatccgaatggcatta
cgcttaccaccggcgatccgtggagcactgatgcccgatgcacatcaggggtatgcgctg
ccggtgggtggtgtaatcgcgtatgaccgtgccgttgcgccgtatcaagttggggttgat
attggctgtcggatgcacctttcgatctttgccgaacttactccagatgatgctcgccgc
gatcggcaactactccttgagacactaagcaaagtgaccgtattcggcattggttcacca
aaaaagccggttgccgatcacccgattctcaccgattcgcgctggcgagcgacgaaactc
ctgcgtgaactgcacgaactggcgagggtacagatcgggacctctggtggaggaaaccat
tttgccgaaattgtcattggggaatggttgacgaacgggcaaccgttcgttggtctctta
acccacagcggtagtcgtggggtaggggccaggattgccaactactatgccgagttggcc
gaccgcgagaccgccgtaattgccaaagggattccgcgcacctatggctggttgagcacc
gagcgcgaagccggccaagagtatttgttggcgatgcggttagccggtgattttgcccgt
gcgaatcacgaagtgatccatgctcgatttgcgcgtgcattgggcttgaaggtgacacag
gtcattgaaaatcatcacaacttcgcctgggagcaacctgacggaacggtgattcatcgt
aaaggtgcgaccccggcggaggcgggggtactcggcattattcccggctcaatggcgacg
gcaagttacattgtcgaaggtctcggtgataaagctacccttgccagcgctgctcatggc
gcgggacgtcgcttcagccgggccgaggcccgtcgcacgatcactccggcgatggcggcg
gcagtcgtgcgtgaggcaggggtgttggtgcgcggcctgaccgttgatgagtcacccttg
gcctacaaagatatcgaatcggtgatggaggtccaaatcgccgccgggttaatccgaccg
gtcgcgcgtatgcggccattagtcgtcgtcatgtccggcgcccgcggcgaagattcgtag
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