Chloroflexus aggregans: Cagg_1356
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Entry
Cagg_1356 CDS
T00824
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cag
Chloroflexus aggregans
Pathway
cag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cagg_1356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cag03021
]
Cagg_1356
03019 Messenger RNA biogenesis [BR:
cag03019
]
Cagg_1356
Transcription machinery [BR:
cag03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Cagg_1356
Messenger RNA biogenesis [BR:
cag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Cagg_1356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
AAA
AAA_25
AAA_22
Mor
ABC_tran
OB_RNB
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
ACL24263
UniProt:
B8G8K1
LinkDB
All DBs
Position
complement(1680458..1681711)
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AA seq
417 aa
AA seq
DB search
MTSGIAETAEKVRRRRRRVNGEASESTTNETVAVTTPPTTTTVIEEPVTMQGSGILEIVP
DGHGFLRNPRLTPGTDDVYVAQSQIRRFNLRTGDMIEGRVRPPKEVERYPSLLYVERVNG
LPAEAAQKRPLFEHLTPIHPNVQIVLSTEANILPTRIVDVIAPIGRGQRGLIVAPPKAGK
TMLLKAIANGITTNAPDIQLIVLLIGERPEEVTDMRRSVQGEVVAATFDEPVEQHIKVAE
LVLEKAKRQVEHGRHVVILMDSLTRLTRAYNIAMPPSGRTLSGGVDPAALYPPKRFFGSA
RNIEDGGSLTIIATCLVDTGSRMDDVIYEEFKGTGNMELHLDRKLAEKRIFPAVDIQRSG
TRREDLLLDPVTLRQSWMLRRMVSMVGENEGAELMLTRMAKTKSNAEFLASLGKVGS
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgacttcaggaattgccgaaaccgccgagaaggttcgtcgtcggcgtcgccgggtgaat
ggtgaggcgagcgaatctacgaccaatgaaaccgtggcggtgaccactccacccacaacc
acaacggtaattgaagaaccggtgacgatgcaaggttctggtatcctcgaaatcgttcct
gatggtcacggttttctccgcaatcctcgcctgacacctggcaccgatgatgtctacgtg
gcacagtcgcaaattcgtcgttttaacctgcgtaccggcgatatgatcgaaggacgggtg
cgtccgccgaaagaggtcgagcgttatccgtcgctgctctatgtcgagcgggtgaatggc
ttgccggcggaagctgcacaaaaacggccactcttcgagcatttgacaccgatccatccc
aatgtccaaattgtgctctcgaccgaggcgaatattctgcctacccggattgttgatgtc
attgcgccgattgggcgtgggcagcgcgggttgatcgttgcgccacccaaggccgggaag
acgatgctcctgaaggctattgccaacggtattacgaccaatgcacccgatattcagttg
atcgtgctgctgatcggtgagcgacccgaagaagtgaccgatatgcggcggtcggtgcag
ggcgaagtggtggccgctacctttgatgaaccggttgagcagcatattaaggttgctgaa
ttggtactggagaaggcaaaacgacaagttgagcacggtcgccacgtggtgatcttgatg
gactcgctgacccgcttgacccgtgcctacaatatcgcgatgccgcctagtggacgaaca
ctttccggtggtgtcgatcccgctgccctctatccgccaaaacgtttcttcggctcggct
cgcaatattgaagatggtggttccctcactattattgcgacctgtctggtcgataccggt
tcacggatggatgatgtgatctacgaagagttcaaaggcaccggtaacatggaactgcat
ctcgatcgtaaactggccgagaagcgcatcttccccgccgttgatattcagcgctcgggt
acgcgccgtgaggatctgttgctcgatccggtaacgctgcgccagagctggatgttgcga
cggatggtcagcatggttggtgagaatgaaggcgctgagctgatgctgacccggatggcg
aagacgaagagcaacgctgagtttttggcgtcgctcggtaaggtgggttcgtga
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