Chloroflexus aggregans: Cagg_3627
Help
Entry
Cagg_3627 CDS
T00824
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cag
Chloroflexus aggregans
Pathway
cag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cagg_3627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cag03021
]
Cagg_3627
03019 Messenger RNA biogenesis [BR:
cag03019
]
Cagg_3627
Transcription machinery [BR:
cag03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Cagg_3627
Messenger RNA biogenesis [BR:
cag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Cagg_3627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA
NACHT
Mor
OB_RNB
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACL26464
UniProt:
B8GA89
LinkDB
All DBs
Position
complement(4406926..4408188)
Genome browser
AA seq
420 aa
AA seq
DB search
MTVAELESKTLADLREIARKYDISGVSSLKKRELIDKLLQVQMATVAPTTDTETIYSDGI
LDIMPEGFGFLRGSRMLPSPEDVYVSQSQIRRFALRSGDRIWGQIRPPKENERYYSLLRV
EKINDQDPETARKRPLFDQLTPIFPNEQIKLETEPNLLHTRLVDLIAPIGRGQRGLIVSP
PKAGKTMLLKAIANGITTNYPDIHLMVLLIGERPEEVTDMRRSVRGEVISSTFDEPVENH
TKVAEMTLERAKRLVEIGHDVVILMDSITRLARAYNVAMPPSGRTLSGGIDPIALYPPKR
FFGAARNIENGGSLTIIATCLIDTGSRMDDVIYEEFKGTGNMELHLDRKLAEKRIFPAID
IQRSGTRREDLLLNPETLRQVWTLRRMVSMLGDNEGTELMLTRMAKTKSNAEFLQTLSKS
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgacagtagctgaattagaaagtaaaaccctcgcagatttgcgcgagatagcacgaaaa
tatgacatctcaggtgttagctcgctgaaaaaacgtgaattaatcgacaagttactccag
gtccagatggcaaccgtcgcaccaacgacagatacggaaacaatttacagcgacgggatt
ttagacattatgccggaaggattcggttttttgcgcggcagtcggatgctgcccagccca
gaggatgtctacgtttcacaatcacagattcgccgctttgccttacggagtggtgatcgg
atctggggacagattcgcccacccaaggagaacgagcgctactactcactgttacgtgtg
gaaaagataaatgaccaagaccccgaaacggcacgtaaacggccgctgtttgatcagctc
acaccgatttttcccaacgaacagatcaagttagaaaccgaacccaatcttttacatact
cgattagtcgatctgattgctcccatcggccgtggtcagcgtggcctcatcgtttcacca
ccgaaagccggcaaaacaatgctgttgaaggcaattgccaacggcattacgaccaactat
cctgacatccatttgatggtattgttgatcggtgaacgacccgaagaggtcaccgatatg
cggcgttcggtacgaggtgaggtgatttcttcgacctttgatgagccggtagaaaaccac
acaaaagtcgccgaaatgacgcttgaacgggcgaagcggctcgttgagattggtcatgat
gtcgtgattcttatggactccatcacccggttagcccgtgcttacaatgtcgcaatgcct
ccgagtgggcgcacactatccggtggtatcgacccaattgcactctacccacccaaacgc
ttttttggcgccgcacgcaacatcgaaaacggtggatcgctcacgatcatcgccacctgt
ctcatcgataccggttcacgcatggatgacgtcatttacgaagagtttaaaggcaccggt
aatatggagctacacctcgaccggaagttggccgaaaaacggatcttcccggcgattgac
attcaacgttccggcacgcgccgtgaggatctcttacttaaccccgagacgctccgccaa
gtgtggacgttgcgccgtatggtgagtatgctcggtgacaatgaaggcactgagctgatg
ctgacccggatggcaaagacgaaatcgaatgccgaattcctgcaaacgttgagcaaaagc
tga
DBGET
integrated database retrieval system
