Chloroflexus aggregans: Cagg_3741
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Entry
Cagg_3741 CDS
T00824
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cag
Chloroflexus aggregans
Pathway
cag03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cagg_3741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cag03400
]
Cagg_3741
Enzymes [BR:
cag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cagg_3741
DNA repair and recombination proteins [BR:
cag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Cagg_3741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
TRCF
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
NucS_C
Motif
Other DBs
NCBI-ProteinID:
ACL26577
UniProt:
B8GAX7
LinkDB
All DBs
Position
4558347..4561895
Genome browser
AA seq
1182 aa
AA seq
DB search
MTSLPAVSWQCSSVSALGTVLAELPVLTRLAAALRPGYQTIAPVPTAARPALIAALARRW
PLPVVYVTLSAESARRAVDDLCQWLSPDRVWLFPAADALPYEHMSAGSDVIARRLAVLRG
LQTGQWSGVIVTPVKALMQPTMPPSELATATIRLRRGMQMPIDQLLHRLLASGYQRAAMV
ETPGEVSRRGAILDVWSSGDELPLRIEWFDDEIDSLRRFEPATQRSEQRLEQAEIGPPHE
IPLWQREEALRRIDALDLRGLRREVAEEWAVAREQLAAGQRFEGRAFYAPFFFTQPATML
DYLPAGSLVTLAEAHLLEQHATEIDVQAATYRDQLVTIGELPPNFPRPYLRWEELELLGQ
TKLVVADLTHNEYPDALVPPLFGVPPLYGGQMRRLIEAIVEQVQAGEMVVAVTAQAARLQ
ELLGERLMGEIASGRFIAILGGLEAGFTVPDLRLTLLTDSEIFGIRQRRPLSERRRKTTV
ADRTAFLRSLKPGDYVVHIEHGIAVFDGMIRRTVGEVEREYLVLRYAGEDKIYVPVDQID
RVTRYIGAGDGPPTLTRLGTQDWERTKRKVRAAVQELAEELLHLYAQRQLKPGFAFSPDN
EWQRELEASFPYLETDDQLRAIAEVKADMERPIPMDRLVCGDVGFGKTEVALRAAFKAVQ
DGKQVAILVPTTVLAQQHFDTFRKRMAAFPVTVEMLSRFRSPKEQDGIVRDLARGKIDII
IGTHRLLSNDVVFRDLGLVIVDEEQRFGVRHKERLKQLRAEVDVLTLTATPIPRTLHMAL
SGIRDLSVINTPPEDRLPIKTYVVPADDHLIQEVIRRELEREGQVYFVHNRVQSIYHVAE
RLRRLVPEARIAVGHGQLAERNLERVMMDFFEGRYDVLVCTTIIESGLDVPNANTIIIDD
ATHYGLAQLYQLRGRVGRGATRAYAYLLYNPAAPMTSDARQRLEAIQEATELGAGFRVAM
RDLEIRGAGNLLGSEQSGHIAAVGFDLYSRLLEQAVQQLKRDVDELTVDRGFTPSPTEMA
AGLCAPTVSEKVLVAPLVTIDLPLTAYLPPTYIADETVRLAVYQRMIDADTIEEVRSLRQ
ELIDRFGGPLPEPVLHLILWLQIRFLALQAGVASITTEGDVFLIRLMTSLTPAMRDRLRR
RFPRDAALKLGQQSIRLERRLVGAQWPERLLAVIEVLVAEAG
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgacctcattaccggcagtttcgtggcaatgctcaagtgtcagcgcgttgggtacagtg
ctcgccgagctacctgtactcacgagattggcagccgctctacgccccggttatcagacg
atagccccggtgccaactgcggctcgcccggccttgatcgctgctttagcccgtcgttgg
ccgttgccggttgtgtacgtgactctgagtgccgagagtgcgcgccgcgccgtcgatgac
ctatgccaatggttatctcccgaccgtgtttggctgtttcccgccgccgatgcactccct
tatgagcacatgtccgccgggagcgatgtgatcgcgcgtcggttggcagtgctgcgtggc
ttgcaaaccggtcagtggtcgggcgttattgtgacgccggttaaggcgctgatgcagcca
acaatgcctccgtccgagttagccacagcgacgatccgattgcggcgtggtatgcagatg
ccgattgaccaacttctgcatagattactggcaagcggctatcagcgtgctgcgatggtc
gaaacccccggtgaggtaagccgccgtggtgccattctcgatgtttggtcgtcgggtgat
gagttgccattgcggatcgagtggttcgatgatgaaattgatagtctgcgccggtttgag
ccggccacgcaacgcagtgagcagcggttggaacaggctgagattggcccaccacacgag
attccgctctggcagcgtgaagaggctttacgtcgaattgatgcgctcgatctgcgtgga
ttacgtcgtgaggtggctgaagagtgggcagtcgcgcgtgaacaactggcagccggccag
cgctttgaaggtcgcgctttctacgcgccatttttctttacccaaccggctaccatgctc
gattacttaccggcagggagtttggtgacacttgccgaagcccatctcctcgaacagcac
gccaccgagatcgacgtgcaagccgctacgtaccgcgatcaattagtgacgatcggtgaa
ctaccgcccaattttccgcggccctatctgcgctgggaagagcttgagctactcggtcag
accaagctggtcgtggccgatctgacccacaacgagtatcccgacgcactcgttccaccg
ctgtttggggtaccgccgttgtatggtggtcagatgcgtcgccttatcgaggcgattgtc
gagcaggtacaggccggtgagatggtggtggcagtgaccgcgcaagccgctcggttgcag
gagctgcttggagaacggttgatgggcgagattgcaagcgggcgctttatcgccattctc
ggtggtcttgaagccggctttaccgtacctgatctgcgcctaaccctgctcaccgatagc
gaaatctttgggatacgccaacgtcgtccgctcagtgaacgtcggcgtaagacgacggta
gccgatcgcactgcctttctgcgctcgctcaaacccggtgattatgtggtgcatatcgag
catggcatcgccgtgtttgatggcatgatccgccgtaccgtcggtgaggttgagcgtgaa
tatctcgtgttgcgctacgccggcgaagataaaatctacgttccggtcgaccaaattgat
cgggtcacgcgctatatcggtgccggcgatggccccccgaccctcactcggcttggcact
caagattgggaacgcacaaagcgtaaagtgcgtgctgcggtgcaagagctggccgaggaa
ctgctccatctgtatgcccaacgtcagctcaagcccggttttgcattttcacctgataac
gagtggcagcgcgagttggaagctagctttccctatcttgagaccgatgaccaactacgc
gctattgccgaggtgaaggctgatatggagcgccccatcccgatggatcgattagtttgc
ggtgatgttgggtttgggaagaccgaggtagccctgcgcgctgcgtttaaagccgtacaa
gacggaaaacaggtagcaatcctcgtaccgacgacggtgttggcccaacagcattttgat
acgttccgtaaacggatggcggcatttccggtgacggtcgaaatgctctcacgctttcgc
tcgccgaaagagcaagacggcatcgtgcgcgatttggcccgaggcaagatcgatattatc
atcggtacgcatcgattgctctccaacgatgttgtgtttcgtgatctcggtttggtgatc
gttgatgaagagcaacggttcggtgtgcggcacaaagagcggctcaagcagttgcgagcc
gaggtagatgtgttgacgctgacggccacacccatcccgcgcaccttacacatggcgctg
tcgggcatccgtgatctgagtgtgattaatacaccgcctgaagaccgtctcccgatcaaa
acgtatgtcgtcccggccgatgatcatctgatccaagaggtgatccgacgcgaactcgaa
cgtgagggacaggtgtactttgtccacaaccgggtacagagcatttaccatgtggcagaa
cggttgcgccggctggtgccggaagcgcggattgcggtcggtcacggtcagctcgccgag
cgtaatttggaacgagtgatgatggatttcttcgaagggcggtacgacgtgctcgtctgt
accacgatcatcgaaagtggtcttgatgttcccaatgcgaataccatcatcatcgatgat
gcaacgcattacggcctagcccagctttatcagttacgtggccgcgtcgggcgtggtgca
acacgggcgtatgcgtaccttctctacaacccagccgcccctatgacatccgatgcccgt
caacgactagaggcgatccaagaagcgaccgaacttggtgccggattccgcgtcgcaatg
cgtgatcttgaaatacgaggcgccggtaatctgttaggttctgagcagtcgggtcacatt
gctgcggtgggtttcgatctctattcacgcctccttgagcaggctgtgcagcaactcaag
cgggatgtcgatgagctgaccgttgatcgaggattcacaccttccccaacggagatggcg
gccggcttgtgcgcgcctaccgtgtcggaaaaggtgttggtggcaccgttggtgaccatc
gatttaccgttgaccgcctaccttccccccacctatattgctgatgagacggtgcgattg
gcggtgtaccagcggatgatcgatgccgacaccattgaggaagtgcgtagtctgcgccaa
gagctgatcgaccgctttggcgggccgctgccagagccggtgttacacttgatcctctgg
ttgcaaataaggttcttggcgctgcaagccggtgtagcgtcgatcacgacggaaggtgat
gtgtttctcatccgcctgatgaccagcttaacgccggcaatgcgtgatcgactgcggcga
cggtttccgcgagatgcggcgctcaagcttgggcagcaatcgatccggctagagcgacgg
ttggttggggcacagtggccagaacgcctgttggcagttattgaagtattggtggctgaa
gcaggttga
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