Costertonia aggregata: HYG79_01170
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Entry
HYG79_01170 CDS
T06693
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cagg
Costertonia aggregata
Pathway
cagg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cagg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYG79_01170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cagg03019
]
HYG79_01170
Enzymes [BR:
cagg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HYG79_01170
Messenger RNA biogenesis [BR:
cagg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYG79_01170
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ANIS5_cation-bd
DUF8086
CMS1
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
QLG44017
UniProt:
A0A7H9AKT0
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All DBs
Position
247619..248926
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AA seq
435 aa
AA seq
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MTFKDLGLAEPILKALETEGYTQPTPIQGQAIPILLKGKDLLGVAQTGTGKTAAFGIPIL
HHLYTSPNNQKGRKRIKALVVTPTRELAIQIGESFTAYGKHTGLKNTVIFGGVKQGKQVD
ILRNGIDILIATPGRLLDLMNQGFISLRDVEYAVLDEADQMLDMGFIHDIKKIIAKLPAN
RQSLFFSATMPKAIVELSRSILGDFEQVTIKPQQATAEKVTQGVYFVSKKNKPKLLVHLL
KEKPTDSVLVFSRTKHGANKIVKKLAQADIRSAAIHGNKSQTARQKALGDFKDGKLKVLV
ATDIAARGIDVEELSLVINFDLPNVPETYVHRIGRTGRASASGIALSFCDKEERPYLKDI
EKLIRQEVPRMPEHQFIDEDDTDQQREPQKQSQKPRNQNRSKNRNRNRSGNSNYRGKKNS
NRNSGSRNNSQKSSE
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagatctaggtttagccgaacccatattaaaagctttggaaaccgaaggg
tatacccaacctacccctattcaaggacaagcgatacccatattgttaaaaggaaaagac
ttgttgggtgttgcccaaacaggaactggaaaaacggcagcttttgggattcccatcctt
catcatttgtatacatcaccaaataatcagaaaggcagaaaacgcatcaaggcattggta
gtaacccccacacgtgaacttgccattcagatcggggaaagttttacggcctacgggaaa
catacgggactaaaaaacaccgtgatttttggtggggtaaaacaaggaaagcaagtagat
atattgcgtaatggcatcgatattttaatcgctacgcccgggcgacttttagatttgatg
aaccaaggtttcatttctctacgtgatgttgaatacgccgtgttggacgaagctgatcaa
atgctcgatatgggttttatacacgacatcaaaaaaatcatcgccaaattaccggcaaat
cggcaatcgctgtttttctcagcaacgatgcccaaggccattgtagaactttcccgttcc
attctaggggattttgaacaggtcaccattaagccacaacaggccacagccgaaaaagta
acgcaaggtgtatattttgtaagtaaaaaaaacaaacccaaactgttggtacatctgctt
aaggaaaagcccaccgactcggttttggtattctcaagaaccaagcacggcgcaaacaaa
atagtgaaaaaattggcccaggccgatattaggtctgctgccattcacggcaacaaatcc
caaacggcccgtcaaaaggccttgggtgattttaaggatggtaaattaaaggtgttggta
gccaccgatatcgctgcacgtggtattgacgtagaagaactttccttggtcatcaatttt
gatttgcccaacgtgccagaaacttatgtgcaccgtatagggcgcacgggcagggcaagt
gccagcggtatagcgctatcattttgcgataaggaagaacggccctatttaaaggatatt
gaaaaattgataaggcaagaggtgcctagaatgcccgagcatcaattcattgacgaagat
gatacggaccaacaaagagagccccaaaagcaatcacaaaaacccagaaaccaaaataga
agtaaaaaccgtaatagaaatcgctccggaaattcaaattaccgcggaaaaaaaaacagt
aacaggaacagcggtagccgaaacaattcccaaaagagtagtgaataa
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