Costertonia aggregata: HYG79_13890
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Entry
HYG79_13890 CDS
T06693
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
cagg
Costertonia aggregata
Pathway
cagg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cagg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYG79_13890 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cagg03019
]
HYG79_13890 (rny)
Messenger RNA biogenesis [BR:
cagg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HYG79_13890 (rny)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
KH-I_KHDC4-BBP
ERM_C
Motif
Other DBs
NCBI-ProteinID:
QLG46392
UniProt:
A0A7H9ASS0
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Position
3019847..3021418
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AA seq
523 aa
AA seq
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MDTTTIIIITAIVGLIIGFIIAKFLEKGKASKTIASAKKEAASIVKDAKAEGESIKKDKI
FQAKEKFLELKAEHEKVIINKDKKIAEAEKRTRDKESQISGELAKNKKLNEQLDSKLKEV
EHKSEFLEKKQSELDKLHKSQVQQLEVISGLSADEAKGQLLESLKDAAKSDAMAFMQTTM
EEAKLTAQQDARKIIINTIQRIGTEEAVENCVSVFNIESDDVKGRIIGREGRNIRALESA
TGVEIIVDDTPEAIILSCFDSVRREVARLSLHKLVTDGRIHPARIEEIVKKTEKQIEQEI
VEVGKRTVIDLGIHGLHPELIRAVGRMKYRSSYGQNLLQHSREVAKLCGVMAAELGLNPK
LAKRAGLLHDIGKVPNTEAEVETPHAILGMQWAEKFGEKPDVCNAIGAHHDEIEMKNLIS
PIVQVCDAISGARPGARRQVLDSYIQRLKDLEEIAFGFGGVQKAYAIQAGRELRVIVESE
KVSDDKAAQLSFEISQKIQTDMTYPGQVKVTVIRETRAVNVAK
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggatactacaactataattatcataaccgcaatcgttggattgattatcggtttcatc
atcgcaaaattccttgagaaaggaaaggcatccaagacgatagcgtcggcaaaaaaggaa
gccgcatcaatagtaaaagacgcaaaagccgagggggagagtatcaaaaaggataaaatt
tttcaggccaaggaaaagtttttggagctaaaggcagagcatgaaaaagttatcatcaat
aaggataaaaaaattgccgaggccgaaaagcgaacaagggacaaagaatcccaaataagc
ggtgaactggccaaaaacaaaaaactcaacgaacaactagattcaaaattgaaagaggtt
gaacataaaagtgagtttttggaaaagaaacaatccgaacttgataaactgcacaaaagc
caagttcaacagttggaggttatttcggggctttcggccgatgaagccaaaggacagctt
ttagaatctttgaaagatgccgccaagtcagacgcaatggcctttatgcaaacaactatg
gaagaagccaaattaacggcccaacaagacgcaagaaaaattatcatcaataccattcaa
cgtataggaaccgaagaagccgtagaaaattgtgtatctgtattcaacattgaatcggac
gacgtaaaagggcgcatcatcggtagggaagggcgaaatattcgtgccttggaatccgct
accggcgttgagattattgttgacgacacccctgaagcaataatactgtcctgctttgat
tccgtcagaagggaagtggcccgtttatccttgcacaaactggttaccgatggccgtatc
catcccgcacgaatcgaagagatcgtaaagaagaccgaaaagcagatagagcaggaaatt
gttgaagtaggaaaaagaacggttattgatttgggtattcacggattgcacccagaattg
atacgggccgttggccgtatgaagtatcgttcctcatacggacaaaacctattgcaacac
tctagagaagtcgccaagctttgtggggttatggcagccgaactgggactcaacccaaaa
ttggccaagcgtgccggacttttgcacgatataggcaaagtacccaataccgaagctgaa
gttgagacgccccacgctatccttggtatgcaatgggccgagaaattcggtgaaaaaccg
gatgtttgcaatgccataggtgcacaccacgatgaaatagaaatgaaaaacctgatttca
cccatcgttcaagtttgcgatgccattagcggggcaagacccggcgcacgaagacaggtg
ttggattcttacattcaacgtctaaaagatttggaagaaatcgcatttgggttcggcggg
gtgcaaaaagcctatgcgatacaagcaggtagggaactacgtgtaatcgtggaaagcgaa
aaagtgagcgacgacaaagcggcacaactgtcttttgagatatcacaaaaaatacagacc
gatatgacctatccagggcaggttaaggtcacggtcattcgtgagacacgtgccgtgaat
gtggcaaaataa
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