Clostridium autoethanogenum: CAETHG_2442
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Entry
CAETHG_2442 CDS
T02883
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cah
Clostridium autoethanogenum
Brite
KEGG Orthology (KO) [BR:
cah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cah03009
]
CAETHG_2442 (rlmD)
Enzymes [BR:
cah01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
CAETHG_2442 (rlmD)
Ribosome biogenesis [BR:
cah03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
CAETHG_2442 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Cons_hypoth95
Methyltransf_25
Methyltransf_15
MTS
PrmA
UPF0020
Methyltransf_11
TRM5-TYW2_MTfase
N6_N4_Mtase
Ubie_methyltran
PCMT
Methyltransf_12
Methyltransf_4
Methyltransf_32
Motif
Other DBs
NCBI-ProteinID:
AGY76653
LinkDB
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Position
2613419..2614849
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AA seq
476 aa
AA seq
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MSEKIEKNKEYIIEIDGMGYQGEGVGKVDGFTIFIQGAIQGEKVKVKVIKVNKNFAFGKL
LEVLEPSPYRANPLCSIYKRCGGCQLQHMSYEGQLDFKKKRVKDCLERIGKFEVEEQDRI
FKDNVLEKSSEDTSVKLYNTLGMTNPYRYRNKVQLPVGKCNQKINIGFYAKASHEIIDME
SCLIQDETSDKIVKFMRDWIEKYNIEPYDEKTGRGTIKHIMTRKGFATGEIMLVIVTFTE
NLPHKKELVELMCKNISGVKSIVHNINNNKTNVILGKKCVNLWGQDTIRDAIGNFKFNIS
PLSFFQVNPIQTEVLYSKALEYAGLSGNEVVFDAYCGTGTISLFLSQKSKKVYGVEIIDE
AIKNARINAEQNGVNNVEFITGKSEVVIPELISKGIKADVVVVDPPRKGCDMGLLKAIAD
MEPRTVVYVSCDPATLARDLAVLRELGYMTKEVQPVDMFAQTAHVECVVKLIKVNQ
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaaaaatagaaaaaaataaagaatatataattgaaatagatggcatgggatac
cagggagagggagttggaaaggtagacgggtttacaatttttatacagggagctattcag
ggagaaaaggtaaaggtaaaagtcataaaggtaaataaaaattttgcttttggaaaattg
ctggaggtacttgaaccgtctccttatagggcaaatcctctctgtagtatatataaaaga
tgcggtggatgtcagcttcagcatatgtcctatgaagggcaacttgatttcaaaaaaaag
agggtaaaagattgcttagagagaataggaaaatttgaagtagaggaacaggatagaata
tttaaagataatgttttagagaaaagcagtgaagatacttcagtaaaattgtataacact
ctaggtatgacaaatccctatagatatagaaataaagtacaattgccagtaggtaaatgt
aatcaaaaaataaatataggattttatgcaaaggcaagtcatgaaataatagatatggaa
agctgcctcattcaagacgaaacttcagataaaatagtaaaatttatgagagattggatt
gaaaagtataatatagaaccctatgatgaaaaaacaggcagaggtactataaaacatata
atgactagaaaaggatttgctacaggtgaaattatgctggtaattgtaacttttactgaa
aacttgcctcataaaaaagaacttgtagaacttatgtgtaagaacatatctggagtaaag
agtatagtacataatataaataataataaaactaatgtgatattgggtaaaaaatgtgta
aatctatggggacaggatactataagggatgctataggtaattttaaatttaatatatcc
cctctttcattttttcaggtaaatcctattcaaacggaagtgctttacagtaaagcattg
gaatatgcaggcttaagtgggaatgaagttgtatttgatgcttattgtggtacgggaact
atatctttatttttatcccagaagtcaaagaaagtatatggtgtggaaataatcgatgaa
gccataaaaaatgcaaggataaatgcggagcaaaatggggtaaataacgtagagtttata
acgggaaagtctgaggtagtgataccagagctcataagcaaaggaataaaggctgatgtg
gtagtggttgatcccccaagaaagggatgtgatatggggctccttaaggcaattgcagat
atggaaccaaggactgtagtttatgtgtcctgtgatcctgcaacccttgccagggattta
gcagtgttgagagagctcggatatatgactaaagaagtacagcctgtggatatgtttgca
cagactgctcacgtggagtgtgtagttaagctaatcaaggtaaatcaatag
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