Catenulispora acidiphila: Caci_5616
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Entry
Caci_5616 CDS
T00967
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
cai
Catenulispora acidiphila
Pathway
cai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Caci_5616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cai03400
]
Caci_5616
DNA repair and recombination proteins [BR:
cai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Caci_5616
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Caci_5616
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_21
AAA_29
nSTAND1
RsgA_GTPase
AAA_25
DnaJ_CXXCXGXG
AAA_22
AAA_16
NACHT
FANCL_C
Viral_helicase1
DUF3090
Motif
Other DBs
NCBI-ProteinID:
ACU74475
UniProt:
C7QB02
LinkDB
All DBs
Position
complement(6472997..6476155)
Genome browser
AA seq
1052 aa
AA seq
DB search
MDRLIVRGAREHNLKDVSVDLPRDALIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSAY
ARQFLGQMDKPDVDFIEGLSPAVSIDQKSTSKNPRSTVGTITEVYDYLRLLYARAGRPHC
PVCGRPIARQSPQQIVDRVLELEEGTRFQVLAPVVRERKGEYVDLFGELQAKGFSRARVD
GVVVQLTEAPTLKKQEKHTIEVVVDRLSVKASAKRRLTDSVETALQLGGGMITLEFVDLA
EDDPNRERMYSEHLYCVYDDLSFEELEPRSFSFNSPFGACPTCSGLGVKLEVDTELVIPD
PDKSLAEGAVTVWGNPSMGSQWFGHVLTSLGQEIGFTMDTPWGRIPAKAQKVVLEGYKKK
ITVRYTNRHGSKRAWETTYEGVKPWITRRYAESDSDSARERLAGYMREVPCEACDGTRLK
PVIRAVTLGGERSEGGRSIDEIAALPVGECAQYLRELTLTDREAQIAARVLKEVNERLQF
LVDVGLDYLSLDRASATLAGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNHRLIE
TLIRLRDLGNTLIVVEHDEDTIAIADWVVDIGPGAGEHGGQVVVSGTVEDLLASEDSLTG
QYVSGRRRIEIPAMRRPIDKKRQLVVRGARENNLRDIDVAFPLGVFVAVTGVSGSGKSTL
VNDILYSTLARELNGARTVPGRHTRVDGVDLLDKVVHVDQSPIGRTPRSNPATYTGVFDH
IRKLFANTTEAKVRGYQPGRFSFNVKGGRCENCQGDGTIKIEMNFLPDVYVPCEVCHGAR
YNRETLEVHFKGKNIGEVLDMPIEEAAEFFEAVPAISRHMQTLVDVGLGYVRLGQSATTL
SGGEAQRVKLAAELKRRATGRTVYVLDEPTTGLHFEDINKLLGVLQRLVDQGNSVIVIEH
NLDVIKTADWLVDMGPEGGRGGGIVVAEGTPEDVAKVADSHTGRFLEPILHGEANAATAA
LTAAQARKPKVAKAIEAAKRSNAPKAAAAASAGAAAKKKTAAGRTPAAKTAAASNAKAPA
AAKSVAKTAVAKTVAKSAAAKKVPAKKAAAKK
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
gtggatcggctgatcgtccgcggcgcgcgggagcacaacctcaaggacgtctcggtagac
ctcccccgggacgcccttatcgtgttcaccggcttgtccggctcgggcaagtcctcgctg
gcgttcgacacgatcttcgctgagggccagcggcgatacgtggagtcgctgtcggcgtac
gcccgccagttcctcgggcagatggacaagcccgacgtcgacttcatcgaggggttgtcc
cctgcggtgtcgatcgaccagaagtccacctcgaagaacccgcggtcgaccgtggggacc
atcaccgaggtgtacgactacctgcgcctgctctacgcgcgcgccggccgtccgcactgc
ccggtctgcgggcgcccgatcgcccggcagagcccgcagcagatcgtggaccgcgtcctg
gagctggaggagggcacccgcttccaggtcctggcgccggtggtccgcgagcgcaagggc
gagtacgtcgacctgttcggcgagctgcaggccaagggcttcagccgggcccgcgtcgac
ggcgtggtggtgcagctgaccgaggcgccgacgctgaagaagcaggagaagcacaccatc
gaggtggtggtggaccggctctcggtcaaggccagcgcgaagcgccggctgaccgactcg
gtggagaccgcgctgcagctcggcggcggcatgatcacgctggagttcgtcgacctcgcc
gaggacgacccgaaccgcgagcgcatgtactccgagcacctgtactgcgtctacgacgac
ctgtccttcgaggagctcgagccgcgctcgttctccttcaactcccccttcggcgcctgc
ccgacctgctcgggcctgggcgtgaagctggaggtggacaccgagctggtgatcccggac
ccggacaagagcctggccgaaggcgcggtcacggtctggggcaacccctccatgggctcg
cagtggttcggccacgtgctcacctcgctcggccaggagatcggcttcaccatggacacg
ccgtgggggcggatcccggcgaaggcccagaaggtcgtcctcgagggctacaagaagaag
atcacggtccgctacaccaaccggcacggctccaagcgcgcgtgggagaccacctacgag
ggcgtcaagccctggatcacccggcgctacgccgagtccgacagcgacagcgcgcgcgag
cgcctggccggctacatgcgcgaggtcccgtgcgaggcctgtgacggcacccgcctcaag
ccggtcatccgcgccgtcaccctcggcggcgagcgctccgagggcggccgctcgatcgac
gagatcgcggcgctgccggtgggggagtgcgcgcagtatctgcgggagctgaccctcacc
gaccgcgaggcgcagatcgccgcgcgggtgctcaaggaggtcaacgagcgcctgcagttc
ctggtcgacgtcgggctggactacctctcgctggaccgcgccagcgccaccctggcggga
ggtgaggcccagcgcatccggctggccacgcagatcggctcgggcctgaccggcgtgctg
tacgtgctcgacgagccctccatcgggctgcaccagcgcgacaaccaccggctgatcgag
accctgatccggctgcgcgacctgggcaacaccctgatcgtggtggagcacgacgaggac
accatcgccatcgccgactgggtcgtggacatcggcccgggcgccggcgagcacggcggg
caggtcgtggtctccgggaccgtggaggacctgctggcctccgaggactccctgaccggc
cagtacgtctccgggcggcgccggatcgagatcccggcgatgcgccggccgatcgacaag
aagcggcagctggtggtgcgcggcgcgcgggagaacaacctgcgcgacatcgacgtcgcc
ttcccgctcggcgtcttcgtcgcggtcaccggcgtgtccggctcgggcaagtccaccctg
gtcaacgacatcctgtactccacgctggcccgcgagctcaacggcgcgcgcaccgtgccc
ggccggcacacccgggtggacggcgtggacctgctggacaaggtcgtgcacgtcgaccag
tcgccgatcggccgcaccccgcgctccaacccggccacctacaccggcgtgttcgaccac
atccgcaagctgttcgcgaacaccaccgaggccaaagtccgcggctaccagccgggccgg
ttctccttcaacgtcaagggcgggcgctgcgagaactgccagggcgacggcacgatcaag
atcgagatgaacttcctccctgacgtgtacgtgccctgcgaggtctgccacggcgcgcgc
tacaaccgggagaccctggaggtccacttcaagggcaagaacatcggcgaggtcctggac
atgccgatcgaggaggccgcggagttcttcgaggccgtcccggcgatctcccggcacatg
cagaccctcgtcgacgtcggcctgggctacgtgcgcctggggcagtcggcgacgacgctg
tccggcggcgaggcgcagcgcgtgaagctggccgccgagctcaagcgccgggccaccggc
cgcacggtctacgtgttggacgagccgaccaccggcctgcacttcgaggacatcaacaag
ctcctcggggtcctgcagcggctggtggaccagggcaactcggtgatcgtgatcgagcac
aacctggacgtcatcaagaccgccgactggctggtcgacatgggtccggagggtgggcgc
ggcggcggcatcgtggtcgccgagggcacgccggaggacgtggcgaaggtcgcggacagc
cacaccggccgcttcctggagccgatcctgcacggcgaggcgaacgccgcgaccgccgcg
ctgaccgcggcgcaggcgcgcaagccgaaggtcgccaaggcgatcgaggcggcgaagcgg
agcaacgcgccgaaggccgcggcggccgcgagcgccggcgcggcagcgaagaagaagacg
gcggccggccggacaccggcggccaagacggcggcggcgtcgaacgcgaaggctccggcg
gcggccaagtcggtggccaagacagcagtagccaagacagtggccaagtcggcggccgcc
aagaaggtgccggccaagaaggccgcagcgaagaagtag
DBGET
integrated database retrieval system
