Catenulispora acidiphila: Caci_8016
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Entry
Caci_8016 CDS
T00967
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cai
Catenulispora acidiphila
Pathway
cai03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Caci_8016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cai03400
]
Caci_8016
Enzymes [BR:
cai01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Caci_8016
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Caci_8016
DNA repair and recombination proteins [BR:
cai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Caci_8016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
HpcH_HpaI
Auto_anti-p27
DZR
DUF7573
Zn_ribbon_6
zf_C2H2_13
MCR
Motif
Other DBs
NCBI-ProteinID:
ACU76839
UniProt:
C7QGY9
LinkDB
All DBs
Position
complement(9308442..9309314)
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AA seq
290 aa
AA seq
DB search
MPELPEVEVVRRGLERWAVGRTVAAAEVLHPRAIRRHPDGPEDFAARAAGLTLLSAERRG
KFLWLPLGEGETSVGEAVTGHLGMSGQLLLQPSGTPDEKHLRIRFTFADDGPELRFVDQR
TFGGMALEKLEHDRQGVVVPASVVHIARDVLDPEFDVDFFHSELRRRNTGLKRALLDQTR
VSGIGNIYADEALWIARLHYDRPTSKMRRPDTDRVLEAAREVMTAALAVGGTSFDSLYVN
VNGESGYFARSLHAYGREGEPCERCGTPIKRESFMNRSSYFCPKCQRLPR
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaactgcctgaagtagaagtcgtccgccgcggtctggaacgctgggctgtcggg
cgcaccgtcgccgccgccgaggtgctgcatccgcgggcgatccgccgccatcccgatgga
cccgaggacttcgccgcgcgtgccgccgggctcacgctgctcagcgcggagcgccggggc
aagttcctgtggctgccgctcggtgagggcgagaccagtgtcggcgaggcggtgaccggg
catctcgggatgagcggccagctgctgctccagccctccggtactccggatgagaagcac
ctgcgcatccgcttcaccttcgccgacgatggtcccgagctgcgcttcgtcgaccagcgc
accttcggcggcatggcgctggagaagctggagcacgaccggcagggcgtggtcgtcccg
gcttccgtcgtccacatcgcgcgcgatgtcctggaccccgagttcgacgtcgacttcttc
cacagcgagctgcgccgccgcaacaccggcctgaagcgcgcgctgctggaccagacccgg
gtcagcggtatcggcaacatctacgccgacgaggcgctgtggatcgcgcgcctgcactac
gaccgcccgacctcgaagatgcgccgccccgacaccgaccgggtgctcgaggcggcgcgc
gaggtgatgaccgccgctctcgccgtcggcgggacgtccttcgacagcctgtatgtgaac
gtcaacggcgagagcggctacttcgcccggtcgctgcacgcctacggccgcgaaggagag
ccctgcgaacgctgcgggacgccgatcaagcgcgagtcgttcatgaatcggtcgagctac
ttctgtccgaagtgtcagcggctgcctcgctag
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