Caulobacter sp. K31: Caul_2572
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Entry
Caul_2572 CDS
T00651
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cak
Caulobacter sp. K31
Pathway
cak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Caul_2572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cak03019
]
Caul_2572
03009 Ribosome biogenesis [BR:
cak03009
]
Caul_2572
Enzymes [BR:
cak01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Caul_2572
Messenger RNA biogenesis [BR:
cak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Caul_2572
Ribosome biogenesis [BR:
cak03009
]
Prokaryotic type
rRNA processing factors
Caul_2572
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABZ71699
UniProt:
B0SXB4
LinkDB
All DBs
Position
complement(2792995..2795712)
Genome browser
AA seq
905 aa
AA seq
DB search
MSKKMLIDAAHAEETRVVVVDGSRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFNEIHPDYYQIPVADREALMRDDSHDDEDDHDHGRDGDDGDAVDDEEDAV
EEELARRKRRLMRKYKIQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLAGRYGVLMPNT
ARGGGISRKITTITDRKRLKSVVQGLDVPQGMGLIVRTAGAKRTKAEIKRDYEYLLRLWE
NIRDNTLHSIAPALIYEEEDLVKRAIRDMYDKDLEGIWVEGEAGYKEARDFMRMLMPSQA
KKVFPYREAAPLFVKHKIEDHLAQIYSPVVPLRSGGYLVINQTEALVAIDVNSGKATRER
NIEATALKTNMEAAEEAARQLRLRDLAGLIVIDFIDMDEGKNNRAVEKILKDSLKDDRAR
IQMGKISGFGLMEISRQRRRTGVLEGTTHVCEHCDGTGRVRSVESSALAALRAVEVEALK
GGGAVTLKVSRPVGIYILNEKRAYLLRLQQTHALFVTVLVDDSLHQAEHDIDRTELGERP
APQIFAPIEPDPVYDDEAFEDEDEEDEEEIEVGASEEDDEAPRVARPARAEPAEDDANGR
RGRKRRRRGGRRDERDEAPVEAAGDEDEEDADGVERAEGDIEGEDEESRRRRRRRGRRGG
RRGGREDGDRPADAFAWTRPRVPFGENAFVWHDPEALDGRNGERRPSGDRPERTERPEPV
EAVVAERAERPERAERGERGGRRGRGRGERGDRTETSADAPRAERTPAPRVDVADLEPAP
LAPAVIEGPPADVWVELPPQDEAPKKARRPRSRGRKATDAETSVEASVEESVAETVEATP
APVDETPLVAADVEVEASVAVQPAPAPEPVMVAPEPVPAPVAAEPDPAEILTPPEKPKRG
WWRRG
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaagatgttgatcgacgccgcccacgccgaagagacgcgtgtggtggtcgtg
gatggttcgcgggttgaagaattcgatttcgagagccagacccgcaagcaactccgagga
aatatctatctcgccaaggtgacccgcgttgagcccagcctgcaggctgcgttcatcgaa
tatggcggcaaccgccacggcttcctcgccttcaacgagatccacccggactattaccag
atcccggtcgccgaccgcgaagcgctgatgcgcgacgactcgcacgacgacgaggacgac
catgaccacggccgtgatggcgatgacggcgacgcggttgacgacgaagaagacgccgtt
gaggaagaactggcgcgccgcaagcgccgcctgatgcgcaagtacaaaatccaggaagtg
atccgccgccggcagatcatgctggtccaggtcgtcaaggaagagcgcggcaacaagggc
gcggccctgaccacctatctgtcgctggccggccgctacggcgtcctgatgcccaacacc
gcccgcggcggcggtatcagccgcaagatcaccacgatcactgaccgcaagcgcctcaag
agcgtcgtgcagggcctggacgtgccgcagggcatgggcctgatcgtccgcacggccggc
gccaagcgcaccaaggccgagatcaagcgcgactacgagtatctgctgcgcctgtgggaa
aacatccgcgacaacacgctgcattcgatcgcgccggcgctgatctacgaggaagaagac
ctcgtcaagcgcgctatccgcgacatgtacgacaaggacctggaaggcatctgggtcgag
ggcgaggccggctacaaggaagcgcgcgacttcatgcgcatgctgatgcccagccaggcc
aagaaggtcttcccgtaccgtgaggcggcgccgctgttcgtcaagcacaagatcgaggac
catctggcccagatctattcgccggtcgtgccgctgcgttcgggcggctacctggtgatc
aaccagaccgaggccttggtcgccatcgacgtcaactcgggcaaggccacgcgcgagcgc
aacatcgaagccaccgcgctgaagaccaacatggaagcggctgaagaagccgctcgccag
ctgcgtctgcgcgacttggccggcctgatcgtcatcgacttcatcgacatggatgaaggc
aagaacaaccgcgccgtcgagaagatcctgaaggactcgctcaaggacgatcgcgcccgc
atccagatgggcaagatcagcgggtttggcctgatggaaatcagccggcagcgccgccgc
accggcgtactggaaggcaccacccacgtctgcgaacactgtgacggcaccggccgcgtc
cgctcggtcgagtccagcgccttggcggccctgcgcgcggttgaagtcgaggccctgaag
ggcggcggcgccgtcaccctgaaggtcagccgtccggtggggatctatatcctcaacgaa
aagcgcgcctatctgctgcgcctgcagcagacccacgccctgttcgtgacggtgctggtc
gacgacagcctgcatcaggccgaacacgacatcgaccgtacggaactgggcgaacgcccg
gctccgcagatcttcgccccgatcgagcccgaccccgtctatgacgacgaggcgttcgag
gacgaggacgaagaggacgaagaagaaatcgaggtcggcgcttctgaggaagacgacgag
gcgcctcgcgtcgcccgtccggcccgcgccgaaccggccgaggacgacgccaacggtcgt
cgcggccgcaagcgccgccgtcgcggcggtcgccgtgacgaacgtgacgaagccccggtc
gaagcggccggcgacgaggacgaggaagacgccgacggcgtcgaacgcgccgaaggcgat
atcgagggcgaggacgaggaatcgcgtcgccgtcgccgccgtcgtggacgtcgcggcggt
cgtcgcggcggtcgtgaggacggtgatcgtccggccgacgccttcgcctggacgcgccct
cgggtgcccttcggcgagaacgccttcgtctggcacgatcccgaggcgctggatggccgc
aacggcgagcgacgccccagcggtgatcgccccgaacgcaccgagcgtcctgaacccgtc
gaggctgttgtcgccgagcgcgcggagcgtccggaacgcgccgagcgcggtgaacgcggc
ggtcgtcgtggacgtggtcgcggtgaacgcggcgaccggaccgagacctccgcggacgcc
ccgcgcgccgaacgcactccggccccgcgcgtcgatgtcgcggatctggagcccgcgcct
ctggctccagccgtgatcgaaggtcccccggccgacgtctgggtggaactgccgccgcag
gacgaagcccccaagaaggcgcgtcgtccgcgcagccgcggccgcaaggcgaccgacgcc
gagacctcggtcgaagcgtctgtcgaagaatcggtggccgaaacggttgaggccacgccg
gccccggtcgacgaaacgccgctggtcgccgccgacgtcgaagtcgaggcctcggtcgcc
gtgcagcccgcgccggctcccgaacccgtcatggtcgcgccagagccggtccccgcccca
gtcgccgccgaacccgatccggcggaaatcctgacgccgcccgagaagcccaagcgcggc
tggtggcgtcgaggctga
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