Caulobacter sp. K31: Caul_5019
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Entry
Caul_5019 CDS
T00651
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cak
Caulobacter sp. K31
Pathway
cak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Caul_5019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cak03021
]
Caul_5019
03019 Messenger RNA biogenesis [BR:
cak03019
]
Caul_5019
Transcription machinery [BR:
cak03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Caul_5019
Messenger RNA biogenesis [BR:
cak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Caul_5019
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
ATPase_2
NACHT
S1CSD-TOTE-2
OB_RNB
AAA_14
AAA
AAA_25
NB-ARC
Motif
Other DBs
NCBI-ProteinID:
ABZ74139
UniProt:
B0T6D6
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All DBs
Position
5421889..5423310
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AA seq
473 aa
AA seq
DB search
MTDQTENQTDSANEAEEPIVDTTTLAASVDPQGDDNGGDDESEVGATVAAMGLKTMSLQE
LKEKSPADLLAFAETFEVENANSMRKQDMMFAILKTLAEEGVEISGSGTMEVVQDGFGFL
RSPEANYLPGPDDIYVSPSQIRKFGLRTGDTIDGAIRAPREGERYFALTGVTLINFESPD
NVKHKVHFDNLTPLYPEERLNMELPDPTIKDRSGRVIDIVAPLGKGQRCLIVAPPRVGKT
VMLQNIAKSIETNHPECYLIVLLIDERPEEVTDMQRTVKGEVIASTFDEPATRHVQVAEM
VIEKAKRLVEHKRDVVILLDSVTRLGRAYNTTVPSSGKVLTGGVDANALQRPKRFFGAAR
NVEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPAIDVLKSGT
RKEELITPRDQLQKTYVLRRILNPMGASDAIEFLLEKMRQSKTNGDFFQSMNT
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccaaacagagaaccagaccgacagcgccaacgaggccgaagagccgatcgtc
gatacgacgaccctggccgcctcggtcgatccgcaaggcgacgacaatggcggcgacgac
gaatccgaagtgggcgccaccgtagcggccatgggcctgaagacgatgtcgctgcaggag
ctgaaggagaaatccccggccgacctgctggccttcgccgagaccttcgaggtcgagaac
gccaactccatgcgcaagcaggacatgatgttcgcgatcctcaagaccctcgccgaagaa
ggcgtggaaatctcgggctcggggaccatggaagtggtgcaggacggctttggcttcctg
cgctcgccggaagccaactatcttccgggtccggatgatatctacgtgtcgccctcgcaa
atccgcaagttcggcctgcgcaccggcgacaccatcgacggcgccatccgcgcgccccgc
gagggcgagcgctacttcgccctcaccggcgtgaccttgatcaatttcgagagcccggac
aacgtcaagcacaaggtccacttcgacaacctgaccccgctctatcccgaggagcggctg
aacatggaactgcccgatccgaccatcaaggatcgctcgggccgggtcatcgacatcgtc
gccccgctgggcaagggtcagcgctgcctgatcgtcgccccgccgcgcgtcggcaagacg
gtgatgctgcagaacatcgccaagtcgatcgagaccaaccaccccgagtgctacctgatc
gtcctgttgatcgacgagcgcccggaagaagtcaccgacatgcaacgcacggtaaagggc
gaggtcatcgcctcgaccttcgacgaaccggcgacccgccacgtgcaggtggccgagatg
gtcatcgaaaaggccaagcgcctggtcgagcacaagcgcgacgtggtcatcctgctggac
tcggtcacccgcctgggccgcgcctacaacaccaccgtcccgtcgtcgggcaaggtgctg
accggcggcgtcgacgccaacgccttgcagcgccccaagcgcttcttcggcgcggcgcgg
aacgtcgaggagggcggctcgctgtcgatcatcgccaccgccctgatcgacaccggcagc
cggatggacgaagtgatcttcgaagagttcaagggcaccggtaactcggaaatcgttctt
gatcgtaaggtggcggacaagcgcatcttcccggccatcgacgtgttgaagtcgggcacc
cgcaaggaagagctgatcacgccgcgggaccaattgcagaagacctacgttctgcgccgg
atcctcaacccgatgggcgcctcggacgccatcgagttcctgctcgagaagatgcgccag
tcaaagaccaacggcgatttcttccagtcgatgaacacctag
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