Candida albicans: CAALFM_C403150WA
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Entry
CAALFM_C403150WA CDS
T00189
Symbol
CaO19.2675
Name
(RefSeq) mRNA-binding U2 snRNP complex subunit
KO
K12828
splicing factor 3B subunit 1
Organism
cal
Candida albicans
Pathway
cal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CAALFM_C403150WA (CaO19.2675)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cal03041
]
CAALFM_C403150WA (CaO19.2675)
03036 Chromosome and associated proteins [BR:
cal03036
]
CAALFM_C403150WA (CaO19.2675)
Spliceosome [BR:
cal03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
CAALFM_C403150WA (CaO19.2675)
Complex B
CAALFM_C403150WA (CaO19.2675)
Complex C
U2 SnRNP specific factors
CAALFM_C403150WA (CaO19.2675)
Chromosome and associated proteins [BR:
cal03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
CAALFM_C403150WA (CaO19.2675)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
GNC1_N
Htt_N-HEAT_1
XMAP215_CLASP_TOG
UTP20_C
MMS19_C
Sec7-like_HDS
PADR1_N
RRP12_HEAT
Motif
Other DBs
NCBI-GeneID:
3637842
NCBI-ProteinID:
XP_720428
UniProt:
Q5AFD2
LinkDB
All DBs
Position
4:660576..663860
Genome browser
AA seq
1094 aa
AA seq
DB search
MKRIMAPIEQKRNLAGNYSIPDSLNKELQKEFAEDVSTPMDKLQDDIINQNNYNKKRFQR
SIVLDLDEQKSYKQIMNERNLEREELRVEKLIKEKDDGTTKTVENPQERLLPRKRKKRWD
VTPEEYKKQKECENNKELVKKSTSSLIIELVEGKVPVVRGIPLTDSILEKILPPGYVKVN
PPAHFKQNEETLPPDLSDAVVSSNYYLPPTNESVGISTTEIPTDVPGVKGLEFFKEEDMK
YFGKLVHSKPESLNDEEKKELNAMKLVLKIKNGSPVTRKRAMRQLTNNAAKFGPKVLLNQ
ILPILLEPNLTPQERHLLIKMIGRIIYQLDELIRPYTSKVLTVISPFLIDEDPTVRLETR
EIISGLTKAAGLANIISTLRPDLDHVDEYVRNLTARIFAIVANTLGLKSFLPFLKAVIKS
KKNWTARHTGIKVIQQLCIMLGRGNGTAILPYLANIVEILKPPINDESLQVRTITALTLA
QLAENVSPYGIDSFEPILEPIWFGIRKHRGKGLASFLKCIGAMIPLMSYDPNYEDYTNYY
TTELMHIITREFRSPDEDMRKTILRIIMGLPLSRKLIPDYEKSIIGPFVNAFWNRRTASD
SVQITRLVVEATNHLAIKFDFLDMLEHIVYFTKDDNEQLRKLAIEAINKLISNNSQELIG
MDSQLDRKLVDGALFAFQKQTIHQKIYLTCFGTLADALNVRLKPHLNSILSTILYRMKNK
LAEIRQQASDLIAIIAPVIKQCSEHDDELLMKLILILYESLGEVYPEVLGSILNALYSCL
DSIDKSTLYTMSNPSINQILPTLTPILKNRHEKVQEACIKLVGLIARKNSETINAKEWMR
ICFDLLEMLKAQRKRIRIAANNTFGYIAKTIGPQDVIVMLLNNLRVQERQLRVCTAVAMG
IVAETCLPFTVLPAIMNEYRIPEKNVQNGVLKAMSFMFEYLDGKITKDYLFAITPLLEDA
LTDRDLVHRQTAATVIFHIAMNCIGLTDKDYSDVFIHYLNLIMPNIFETSPHVISRILES
IDALRLVIGNGVFTNYIWSGLFHPARKVRAPYWKIFNNAYVQCSDALVPCYPRIESLPDE
DEISYKLEELDLFL
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggattatggcacccattgaacagaaaagaaacttggctggcaattactccata
cctgactctttaaataaggagctacagaaggagtttgcagaagatgtatctactccaatg
gataaattacaagatgacatcattaatcaaaacaactacaacaagaaacgatttcagagg
tctattgtgttggacttggacgagcaaaaaagttataaacaaatcatgaatgaaagaaat
ttggaaagagaggaactccgagtagaaaagcttattaaagagaaagacgatggaacaact
aaaaccgttgaaaacccacaagagaggttactaccccgtaaaagaaagaagagatgggac
gtgacaccagaagaatacaagaagcaaaaagagtgtgaaaacaataaagaattggtcaaa
aaatctacatcctcacttattatagaattggtagagggaaaagttcctgtagtaagaggg
attccattaacagactcgatattagaaaagatcttgccacctggatatgtaaaagtgaat
cctccagcacatttcaaacaaaatgaagagacgttaccaccagatttgtctgatgctgta
gtatcatcgaattactatctaccaccaactaatgaatccgtgggtatttccacaacggag
attccaacagatgtacccggagtgaaaggtttggagtttttcaaagaggaagatatgaaa
tattttggcaagttagttcattccaaaccagagtccttgaatgatgaagaaaagaaagaa
ctaaacgctatgaaattggtgttgaagataaaaaatgggtcgccagtaacacgtaaacga
gccatgagacaattgactaataatgcagcaaaatttggtcccaaagttttattaaatcaa
attcttcctatattgttggagccaaacttaactccacaggagagacatttgcttataaaa
atgattggacgtattatttaccaattagacgagttaattcgaccatatacttctaaagtt
cttacagtcatatcaccattcttgatagatgaagaccctacagtaaggttggagacacga
gaaatcatatcaggcttgactaaagcagctggtttagccaatattatatcaacattaagg
ccagatttagaccatgttgatgagtatgttcgaaacttgacagcacgtatattcgccata
gtggccaacacattgggattaaaatcatttttaccattcttaaaagcagttatcaagtcg
aaaaagaactggacagcaagacatactggtatcaaagttattcaacaattatgtattatg
ctaggacgaggaaatggtacggcaatattgccatatcttgcaaatatagttgaaatattg
aaacctccaatcaatgatgagtcattacaagtcagaactataacagcgttaactttggct
caactagctgaaaacgtgtcgccatatggtattgattcgtttgaacccatattggaacca
atttggtttggaatcagaaaacataggggcaaaggcttggctagtttcttaaaatgtatt
ggagcaatgatccccttgatgtcatatgatccgaattatgaagattacacaaattattat
acaacagagctcatgcatatcataacacgtgaattcagatctcctgatgaagatatgaga
aagactattttgcgtattataatgggattacctttgtcgagaaagcttattccagactat
gaaaaatcaattatcgggccgtttgtcaatgcattttggaatcgtcgaactgcttctgat
tcagtccaaatcacaaggctagtagtagaggcaaccaaccatttggctattaaattcgat
tttctcgatatgttagaacatattgtttactttacaaaagacgacaatgagcaattgcgg
aagttagcgattgaagctattaacaaattaatttccaacaatagtcaagaattaataggt
atggattctcaattggatagaaaattggtcgatggtgctttatttgcttttcaaaagcaa
actattcaccaaaagatatacctcacctgttttgggacattggcagatgccttgaacgta
agattgaaacctcatttaaattcgatattgagtactatcttgtaccgaatgaaaaataaa
ttggcagaaataagacagcaagcttcagatttgattgctattattgctccagtaattaaa
caatgttcagaacatgatgatgaattgttaatgaaattgatattgattttgtatgaatcc
cttggtgaagtctaccccgaagttttggggtcaattttaaatgctttatattcgtgtctt
gattcaattgacaaatcaacattatataccatgtcaaatccttcaattaatcaaatccta
ccaacgctaacaccaattttgaaaaatcgacacgaaaaagttcaagaagcatgtataaaa
ttggttggattaatagccagaaaaaactctgaaactataaacgcaaaggaatggatgcgt
atttgttttgatttgttggaaatgttaaaagcccaacgtaaaagaatacgtattgcagct
aataatacattcggctatattgccaaaactattggaccccaagatgtaatagttatgctt
ttgaataatctacgtgttcaagaacgtcaattgagagtttgtacggctgtggcaatgggt
atagttgctgagacttgtttaccatttactgttttgccagcaattatgaatgaatacaga
atccctgagaaaaatgtacaaaacggtgtattaaaggcaatgagttttatgtttgagtat
ttggatgggaaaattacaaaagattatttgtttgctataacgcctttattagaagatgca
ttgacagatagagatttagtacatcgtcagactgctgcaacagtaattttccacatagca
atgaattgtattggattaactgataaggattatagtgatgtcttcattcattacttgaac
ttgattatgcctaatatttttgaaacatcaccgcatgtgatttcaagaattttggaaagt
attgatgccttaaggttggttattggtaatggagtatttacaaactacatttggtctgga
ttatttcatcctgcaaggaaagtcagagcaccgtactggaagattttcaacaatgcttac
gttcaatgtagtgatgcattggttccatgctacccaagaatcgagagtttaccggacgaa
gatgaaataagttacaaattggaagagttggatttgtttttatag
DBGET
integrated database retrieval system
