Candida albicans: CAALFM_C504730CA
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Entry
CAALFM_C504730CA CDS
T00189
Symbol
SSD1, CaO19.3959
Name
(RefSeq) mRNA-binding translational repressor
KO
K18748
protein SSD1
Organism
cal
Candida albicans
Brite
KEGG Orthology (KO) [BR:
cal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cal03019
]
CAALFM_C504730CA (SSD1)
Messenger RNA biogenesis [BR:
cal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
CAALFM_C504730CA (SSD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
Dis3l2_C_term
CSD2
Rrp44_CSD1
Rrp44_S1
Motif
Other DBs
NCBI-GeneID:
3636520
NCBI-ProteinID:
XP_721868
UniProt:
Q5AK62
LinkDB
All DBs
Position
5:complement(1025651..1029475)
Genome browser
AA seq
1274 aa
AA seq
DB search
MSSSQDYNNNSNNTPARVSSRKGKNLHVAHRRSPSELTNLMVEQYNLQRQLEEVQAQQKL
LEEKQKQQQQQFTYPSAQGSSELAPPPISSGYGGNRSSHSRSSSINTHRRTGSGSGGTAH
GHSRRHSLGLNEAIKAAANQKQSNRNSLSPTIPNEAKTDSSDDIGSFKFPPSGGDQGDTS
GQSSSSHNRSRSLAYGQQSFKFPPTPDQSNDTRGNSLLPPNPNFSVTQSPDRGHNRRSSH
FRTGSRGSGSNTNTDGINSNWRAQQQSPQQQQRQGGLLEPPQVGFTPGHKPRNSSYGGGS
SVSSLQQFLPNNGGSNNSGQQGGHQGGGNNGRKTLFAPYLPQSSLPELINEGRLVTGTLR
VNKKNRSDAYVSTDGLLDADIFICGSKDRNRALEGDLVAVELLIVDEVWESKKEKEEKKR
RKDNTLHSRPLTDDIHNDATSAPNTAEGSVTGTSKEDGAGSNEEETGGLARRGSLKQRPT
MKKNDDVEVEGQSLLLVEEEEINDEIKPLYAGHVVAVVDRIPGQLFAGTLGLLRPAQAAQ
AARDKKNGKESTVQNPKAPKIVWFKPTDKKVPLIAIPTEQAPKDFVENHEKYADRLFVAS
IKRWPITSLHPFGTLVSNLGPIDSPETEIDSILRDNNFLCDEYPDDDNDDIVSVNAYDLP
SIEPEFENTQREEYLNDYIIAFTQNGEFVDHALHVKRISNTKIELGFHVADIAYFIKPGS
SLDRKSKKRSSSVFLPQKTVNLFPKQVNKIVSFKENEKNLAVSVVFEIDTSNFEVEDLYI
HESVIVPKQLVTYDAFDTILSGQSVDSISSATSDYVKTFSLIAKEFRRHRLSNRSLGITP
NLTLLDQLDDEKVRLDLNIFKDSLAFDVISEISHKVNSAIAAKVHAGLGDQAILRRHPLP
TLQKMETFVRKATSLGFKIDTTTSSTLQNSILKIDDPVKRKCVETLLYKCMSRGRYYVAG
KQDTDSYAHYYFNLPLYTHFTAPLRRYADLIVHRQLKAVLNKQVEDKDLDSLKAITDYCN
FKKDCAANAQEQAIHLLLSQTINEMSETAGQLLCMGTVVQVYESSFDVFIPEFGVEKRVH
GDQLPLVKAEFDKNERILELWWEKGVDSATYIPPDEKSSLSYRNSIKNKYRTSALQAAKI
QSKTALEKSTTPADSVAEKLAKLNLEPPKLVVPSLKSNELHEVEKDETKSMPSSPTQSEI
PKNVRTNSSSRISSSGNTFSLEPYLQNTITRIEGDSYIQVIKELTQVPVLLRAEIGMALP
CLTVRVLNPFAEEQ
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgtcacaagattacaacaacaacagtaataataccccagccagggtttccagc
agaaaggggaaaaacttgcatgttgcacatagacgttctccatccgaattaaccaacttg
atggttgagcaatataacttgcaacgtcaattggaagaagtgcaagctcaacagaaactt
ttggaagagaagcaaaaacagcaacaacaacaattcacatacccttcagctcaagggagt
tcagagttagctccacctccaatatcatctgggtatggaggtaataggtcatcccactcc
agatcatcgtcaatcaatacccatagacgtactggatctgggtctggaggaactgctcat
gggcattcaagaagacactctttggggttgaatgaagccatcaaggcagcagcaaatcaa
aagcaaagcaacagaaacagcttaagcccaacaattccaaatgaagccaagactgacctg
tctgacgacattgggtcttttaagtttccaccatccggtggggaccaaggagatacctct
ggtcaatcatcatcatcacacaatcgttcaagatcattagcatatgggcaacaatctttc
aagttcccaccaacaccagatcaatcaaacgataccagaggtaatagtttgttacctcca
aacccaaattttagtgttactcagtcacccgatcgtggccataatcgcagatcatctcat
ttccggacaggatctcgtggtagtggaagcaacaccaataccgacgggataaactccaac
tggagagcccaacagcaatctccgcagcaacaacaaagacagggtggtttattggaacca
cctcaagtcgggttcacccctggccataaaccacgtaatagctcatatggtggtggttct
tcggtgtcctcattacaacagtttcttccaaataatggtggatcaaacaattctggccaa
caaggtggccaccaaggaggaggtaataacggaagaaaaaccctttttgctccttacttg
ccacaatcttctttgcccgaattaattaatgaaggacgcttggttactggtactttgaga
gttaacaaaaagaatagatccgatgcatatgtttctactgatggtttgctcgatgccgac
atttttatttgtggctcaaaggatcgtaatcgtgctttggaaggtgatttagttgccgtt
gaattgttgatagtcgatgaagtgtgggagtccaagaaggaaaaagaagagaagaaaaga
agaaaggacaacactttgcattcaagaccattaacagatgatatacacaatgatgcaact
tctgcaccaaacacagctgaaggatcagtaactggcacttcaaaagaagatggcgctggc
tctaacgaggaggaaactggtgggcttgccagaagaggttccttgaaacaaagaccaacc
atgaagaaaaatgatgatgttgaggttgaaggtcaatcattgttgttggttgaagaagag
gaaattaatgatgagattaaacctctctatgccggacatgttgtagctgttgtcgataga
atccctggccagttgtttgctggtactttgggtcttttaagaccagcacaagcagcacaa
gcagcaagagataagaaaaatggtaaggagtctaccgttcaaaaccctaaagctccaaag
attgtttggttcaaaccaactgataagaaagtacctttgattgcgattccaactgaacag
gcaccaaaggattttgttgaaaaccacgaaaagtatgctgatcgattatttgtagcatcc
atcaagagatggccaatcacttcattacatccctttggtacgttggtaagcaacttagga
ccaattgattccccagaaactgaaattgattctattttgagggacaacaactttttatgt
gacgaatatcctgatgacgataatgacgacattgtgtctgttaatgcttacgatttacct
tcgattgaacccgagtttgagaacacgcaaagagaggaatatttgaatgactatattatt
gcatttactcagaatggcgagtttgttgaccatgccttgcacgttaaaagaatctcaaat
accaaaattgaattggggttccatgttgccgatattgcctattttattaaaccagggtct
tcattagatcgtaaatcaaagaaaagatcatcttctgttttcctccctcaaaaaacagtc
aacttgtttccaaaacaagttaacaaaatcgtctctttcaaggaaaatgagaaaaactta
gctgtttcagttgtttttgaaattgatactagtaattttgaagtcgaagatttgtacatc
catgaatctgtaattgttcctaaacagttggttacttacgatgcatttgatactatttta
ctgggtcaatccgttgatagcatttcttcagcaacttcagattatgtaaagacttttagc
ttgattgcaaaagagttccgtcgccaccgtttatcaaaccgctcactcggaatcacccct
aacttgacattgttagaccaattggatgacgaaaaagttcgattagatttgaacatattc
aaggattctttagcatttgatgtgatttcagaaatctcacacaaagtgaattctgcaatt
gctgcaaaagttcatgctggcttgggagatcaagcaattttgcgtcgtcatccattgcct
acattacaaaaaatggaaacatttgtaaggaaagcaactagtttgggattcaagattgac
accacaacttcgtctactttgcaaaactctatcttgaaaattgatgatccagttaaaaga
aaatgtgttgaaactttgctttacaaatgtatgtcgaggggtagatattatgttgcagga
aagcaagatactgatagttatgcccattattatttcaacttacctttatacacgcatttc
acagcaccattgagacgttatgccgatttaattgttcatagacaattaaaagctgtcttg
aacaaacaagttgaagataaagatttggactcattgaaggctatcacggattattgtaac
ttcaagaaggattgtgctgctaatgcccaagagcaagctatacacttgttgttatcccaa
acaatcaatgaaatgagtgaaaccgctggtcaattgttgtgcatgggaacagtagtccaa
gtgtacgagtcatcgtttgatgtatttattccagagtttggagttgaaaaaagagtccat
ggtgaccagttgcctttggtcaaagctgaatttgacaaaaatgaaagaatcttggaactt
tggtgggaaaagggtgttgattctgctacatatatcccacctgacgaaaaatcatcatta
tcgtacagaaactccattaagaataaatacagaacttctgctttacaagcagccaagatc
caaagcaaaacagctttggaaaagtctactactccagcggattcagttgcagagaaatta
gctaagttgaatttggagcctcccaagttggtagtaccatccttgaaaagtaatgaattg
catgaagtggaaaaagatgaaacaaaatcaatgccttcatccccaactcaatcagaaatt
cctaagaatgtcagaactaattcatcatctcgtatttcttctagtggcaacacttttagc
ttggaaccttatttgcaaaataccatcactagaattgagggtgattcatacattcaagtg
atcaaggaattgacacaagttcctgttttgttaagagctgaaattggtatggctttgcca
tgtttgacagtaagagttttgaacccatttgctgaagaacagtaa
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