Candida albicans: CAALFM_C703400CA
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Entry
CAALFM_C703400CA CDS
T00189
Symbol
CaO19.1335
Name
(RefSeq) ATP-dependent RNA helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cal
Candida albicans
Pathway
cal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CAALFM_C703400CA (CaO19.1335)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cal03019
]
CAALFM_C703400CA (CaO19.1335)
03041 Spliceosome [BR:
cal03041
]
CAALFM_C703400CA (CaO19.1335)
03009 Ribosome biogenesis [BR:
cal03009
]
CAALFM_C703400CA (CaO19.1335)
03016 Transfer RNA biogenesis [BR:
cal03016
]
CAALFM_C703400CA (CaO19.1335)
Enzymes [BR:
cal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CAALFM_C703400CA (CaO19.1335)
Messenger RNA biogenesis [BR:
cal03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CAALFM_C703400CA (CaO19.1335)
Spliceosome [BR:
cal03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CAALFM_C703400CA (CaO19.1335)
Complex C
U4/U6.U5 tri-SnRNP related factors
CAALFM_C703400CA (CaO19.1335)
Ribosome biogenesis [BR:
cal03009
]
Eukaryotic type
Pre-60S particles
Helicases
CAALFM_C703400CA (CaO19.1335)
Transfer RNA biogenesis [BR:
cal03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CAALFM_C703400CA (CaO19.1335)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
3646717
NCBI-ProteinID:
XP_711675
UniProt:
A0A1D8PRD5
LinkDB
All DBs
Position
7:complement(745808..748996)
Genome browser
AA seq
1062 aa
AA seq
DB search
MDDLFDVFDEAPQAAPPKIEEIKDEVKPETTDNQTRSTKKRQFDNNNKTTTNSNNSSSSN
NKKHKQAEDIKPVVFDSVEIETSREVKPSEGLSNSATVDADNKLKLKHQIRHQVAIPPSY
PYVPIGEHKRKHEARTYPFTLDPFQDTAISCIDRNESVLVSAHTSAGKTVVAEYAIAQSL
RDKQRVIYTSPIKALSNQKFRELQAIFGDVGLMTGDVTINPDAGCLVMTTEILRSMLYRG
SEVMREVAWVVFDEVHYMRDKSRGVVWEETIILLPDKVHYVFLSATIPNAMEFAEWIVKI
HNQPCHVVYTDFRPTPLQHYLFPAGGDGIHLVVDEKGTFREENFQKAMATISDNSGDDPA
SSDSGRGNKKGKTNKGRNHQDGKGDIYKIVKMIYMKKYNPVIVFSFSKRDCESLALKMSK
LDFNTDEERNSLTQIFYNAIELLPEADRELPQIKNILPLLKRGIGIHHSGLLPILKEIIE
ILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGVGFRWVSGGEYIQMSGRAGRRG
LDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLEHS
FFQFQKASSVPILEGKLAQCKQEFADITIEDEPIIKDYYDLKQQLLKYNEDVRKVITHPG
NILPFLQDGRVIKVKIGDLDYGWGMVTTFTKRNRRHQEEFAPHDAYVVEVFITTMFIDSP
VNLIKKFNPMLPEGIRPAKSGEQTRAEFISITLSSIEKISTVRLRVPDDYKSSTAKRTLV
KTLKDLPKRLPDGIPLIDPVQSMKITDDDFKKLLQKIDILDSKIVSNPLNNSARLDDLYA
KYTAKVDLNNQIKKLEEQIFQAKSIIQLDQLSNMKRVLKKLEFTGSEEVVELKGRVAAEL
STGDELMITELLFSGFFNELTPQQICGLLSAFIFQERAKELPKLKPELAEPAKVIHETAN
KIAKISKQSGLEIVEKDYIEQFNLALVEVVFVWSNGASFSSICKMTDIYEGSIIRALRRE
IELIKQLVDASKIIGNQELVDKFEKCIELINRDFVQVSSLYM
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atggatgacttgtttgatgtctttgatgaagctcctcaagcagctccacctaaaatagaa
gaaatcaaagatgaagtgaaaccagaaaccacagataatcaaactcgctctacgaagaaa
cgtcagttcgacaacaacaacaaaacaactaccaacagcaacaacagtagtagtagtaat
aacaaaaaacataaacaagctgaagatattaaaccagttgtttttgattcagttgaaatt
gaaacatctagagaagtcaaaccaagtgaaggattgagtaattctgccacggttgacgca
gataataaattgaaattaaaacatcaaattagacatcaagtagccatcccaccatcatat
ccttatgtaccaattggtgaacataaacgtaaacatgaagctagaacttatccattcaca
ttagatccgttccaagacaccgctatttcatgtatagatagaaatgaaagtgttttagtc
tcagctcatacttctgctggtaaaaccgtggtggcagaatacgctattgcccaatccttg
agagataaacaaagagttatttatacttcccctattaaagctttatcaaatcaaaaattc
cgtgaattacaagcaatttttggtgatgttgggttaatgactggtgatgtcaccattaat
cctgatgctgggtgtttagtcatgactacagaaattttaagaagtatgctttatagaggg
tcagaagtgatgcgtgaagttgcttgggtagtgtttgatgaagtccattatatgagagat
aagtctcgtggggttgtttgggaagaaacgattattttattacccgataaggttcattat
gtatttttatcagctacaatccctaatgctatggaatttgctgaatggattgtgaaaatt
cacaatcaaccatgtcatgttgtttacactgattttagaccaactcctttacaacattat
ttgttccctgctggtggtgatggtatccatttagttgttgatgaaaaagggacattcaga
gaagaaaattttcaaaaggcaatggcaactatcagtgataatagtggcgacgaccctgct
tcaagtgatagtggtagaggtaataaaaagggtaaaaccaataaaggtcgtaatcatcaa
gatggtaaaggtgatatctataaaattgtgaaaatgatttatatgaaaaagtataatccg
gttattgtattttcattttctaaacgtgattgtgaatctttagctttaaaaatgtcaaaa
ttagatttcaatactgatgaagaacgtaattcattgacacaaatcttttataatgccatt
gaattgctacctgaagctgatcgtgaattacctcaaattaaaaacattctaccattattg
aaaagaggtattggtatccatcattcagggttattaccaattttgaaagaaattattgaa
attttattccaagaaggatttttaaaagtattatttgccactgaaactttttctattgga
ttaaatatgccggctaaaaccgttgtttttacatccgtgcgtaaatgggatggtgttggt
tttagatgggtttctggtggtgaatatatccaaatgtctggacgtgccggtagacgtggg
ttggatgatcgtggtattgttataatgatgatcgatgagaaaatggaaccacaagtagct
aaaggtatggtaaagggtcaagctgatagattagattctgcattccatttaggatacaat
atgattcttaatttaatgagagtggaaggtatttccccggaattcatgttggaacattca
tttttccaattccaaaaggcatctagtgttcctattttagaggggaaattagctcaatgt
aaacaagaatttgctgatattaccattgaagatgaaccaattataaaggactattatgat
ttgaaacaacaattgttaaaatataatgaagatgtacgtaaagttattactcacccaggt
aatattttaccatttttacaagatggtagagttattaaagttaaaattggtgatcttgat
tatggatggggtatggttaccacatttacgaaaaggaaccgtagacaccaagaagaattt
gctccacatgatgcatacgttgttgaagtatttataacaaccatgtttattgattcacca
gtcaatttaattaaaaaatttaaccctatgttgcctgaaggtattcgaccagctaaatca
ggggaacaaaccagagctgaatttatttctatcaccttaagctcaattgagaagattagt
actgttagattaagagttcctgatgattataagagttcgactgccaagagaacattggtt
aaaactttgaaagatttaccgaaaagattacccgatggaatcccattaattgatccagta
caaagtatgaaaatcactgatgatgatttcaaaaaacttctacaaaaaattgatatttta
gattctaaaatagtttctaatccattgaataatagcgctagattggatgatttatatgcc
aaatacactgcaaaagttgatttaaacaatcaaatcaaaaaattagaggaacaaatattc
caagccaaatcaatcattcaattagatcaattatcgaatatgaaacgagttttgaaaaaa
ttagaattcactggttcagaagaagttgttgaattgaaaggtagagtagctgctgaatta
tctactggtgatgaattaatgattactgagttattattctccgggtttttcaatgagtta
actccacagcaaatttgtggattattgtcagcatttattttccaagaacgagctaaagaa
ttacctaaattaaaaccagaacttgctgaaccagcaaaagtaattcatgaaaccgctaat
aaaattgctaaaatttcaaaacaaagtggattagaaattgttgaaaaagattatattgaa
caattcaatcttgccttagttgaagttgtatttgtatggtctaatggtgcttcattcagt
tcaatttgtaaaatgactgatatttatgaaggtagtataattcgtgccttaagaagagaa
atcgaattgattaaacaattggtagatgcatcaaaaatcattggtaatcaagaattggtt
gataaatttgaaaaatgtattgaattgatcaatagagattttgtacaagtatcttcattg
tatatgtaa
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