Chenopodium album (lamb's quarters): 145560071
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Entry
145560071 CDS
T11950
Symbol
LOC145560071
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
calb Chenopodium album (lamb's quarters)
Pathway
calb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
calb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
145560071 (LOC145560071)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
calb03021
]
145560071 (LOC145560071)
03019 Messenger RNA biogenesis [BR:
calb03019
]
145560071 (LOC145560071)
Transcription machinery [BR:
calb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
145560071 (LOC145560071)
Messenger RNA biogenesis [BR:
calb03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
145560071 (LOC145560071)
U7-dependent histone pre-mRNA processing factors
145560071 (LOC145560071)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
DUF3213
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
145560071
NCBI-ProteinID:
XP_081477455
LinkDB
All DBs
Position
9:62238528..62245526
Genome browser
AA seq
694 aa
AA seq
DB search
MASTGQPPSSLKKRDSPATREGDQLIITPLGAGSEVGRSCVYMSYKGKTVMFDCGIHPAY
SGMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGKVYMTHATKAIYRLLL
SDYVKVSKVSVEDMLFDEQDILRSMDRIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMFMV
DIAGVRVLYTGDYSREEDRHLRCAETPEFSPDICIIESTYGIQLHQPRHMREKRFTDVIH
STVAQGGRVLIPAFALGRAQELLLILDEYWSNHPELHNIPIYYASPLAKRCMAVYQTYIN
AMNDRIRSQFESSNPFDFKHISPLKSIENFDDVGPSVVMASPGGLQSGLSRQLFDKWCTD
KKNTCVIPGYVVEGTLAKTILNEPKEVTLMNGLAAPLNMQVRYISFSAHADYSETSAFLK
ELMPPNIILVHGEATQMGRLKQSLIDLFSDQNTKIMSPKNCQSVEMYFSSEKMAKTIGRL
AEKTPEVGETVSGLLVKKGFTYQIMAPEDLHLFSQLCTANVNQRITIPYSGAFGVLKHRL
KQIYESVESGVDEDSNVPTLRVHDSVTIKQESEKHVSLHWSADPICDMVSDSIVAMVLNL
SKEMPKVVVDSESEKTQESQEKMQKVAHALLVSLFGDVKLGEDGRLVITVDNNVAYLDKQ
SGDVESENEGLKERVRTAFRRIHSAVKPIPLPAA
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaactggtcagccaccatcatcgctgaaaaaacgcgattctccagccacaaga
gaaggagatcaacttattataaccccattaggcgctggaagtgaagtgggacgatcttgt
gtttatatgtcctacaaagggaagactgtaatgtttgactgtggcattcaccctgcatat
tctggaatggctgctttgccttactttgatgaaattgatccttcaacaattgacgtcctt
ctgattactcactttcacttggatcatgctgcatctcttccatatttcttggaaaagact
acatttaaaggcaaagtttatatgactcatgcaactaaagctatctacagacttcttttg
tctgattatgtcaaagtcagcaaagtttcagttgaagacatgctgtttgatgagcaagat
attcttcgttctatggacagaattgaggttattgattttcatcaaactttagaagtaaat
ggaattcgtttctggtgttatactgccggtcatgtccttggtgcagccatgttcatggtg
gacattgccggagtgagagtgctttatactggtgattattcccgtgaagaagacagacat
ttacgttgtgctgagactcctgagttctctcctgacatatgtataattgaatccacttat
ggtattcagctacatcaacctaggcacatgagagagaaacgcttcactgatgttattcac
tctactgttgcccaagggggccgtgttcttattccggcatttgctcttggtcgtgctcaa
gaactgttattaattcttgatgagtattggtcgaatcaccctgagcttcacaacatcccc
atatattatgcttctcctcttgcaaaaagatgcatggctgtctatcagacctacataaat
gctatgaatgacaggatccgcagccaatttgaaagttcaaacccctttgacttcaagcac
atatctccactgaagagcattgagaattttgatgatgtcggtccctcagtggtgatggca
agtccaggtgggcttcagagtgggctgtccagacagctttttgacaagtggtgtacagac
aagaaaaatacatgtgtcattcctgggtatgtagttgaagggacgttggccaaaaccatc
ttaaacgaaccaaaggaagtgaccctgatgaacggtcttgctgctcctcttaatatgcag
gtccgttacatatccttctctgctcatgctgattattctgaaacaagtgctttccttaaa
gagcttatgcctcccaacataatacttgttcatggagaggctactcaaatgggaaggctt
aaacagagtctcatcgacttgttttctgatcagaataccaaaattatgtctcctaagaac
tgccagtctgttgaaatgtattttagttctgaaaaaatggcaaaaaccataggaaggctc
gctgagaaaacccctgaagttggtgaaactgtgagtggtttattggtgaagaaaggcttc
acttaccagattatggccccagaagatcttcacttattttctcagctatgcacagctaat
gttaaccaacggattaccattccttattctggtgcatttggtgttttgaagcacagatta
aagcagatatatgagagtgttgaatctggggttgatgaagattctaatgttccaacatta
cgggtacatgattctgttactataaagcaggagtcagaaaagcatgtatccctccattgg
tcagctgatccaatctgcgacatggtttcagattcaatagtggctatggttctaaatttg
agcaaagagatgcctaaagtagtggttgattcagagtctgaaaaaactcaagaaagtcag
gagaagatgcagaaggttgcccatgcacttctggtatcactgtttggagatgtgaagttg
ggtgaagatgggagattggtgatcactgttgacaacaatgtggcttatcttgacaaacag
agtggtgatgttgagagtgagaatgaagggctgaaggaaagagttagaacagcattccga
cgtatccatagtgctgtcaagcctattcctcttcctgctgcgtag
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