Chenopodium album (lamb's quarters): 145570060
Help
Entry
145570060 CDS
T11950
Symbol
LOC145570060
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
calb Chenopodium album (lamb's quarters)
Pathway
calb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
145570060 (LOC145570060)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calb03019
]
145570060 (LOC145570060)
Enzymes [BR:
calb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
145570060 (LOC145570060)
Messenger RNA biogenesis [BR:
calb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
145570060 (LOC145570060)
mRNA degradation factors
3'-5' decay
Ski complex
145570060 (LOC145570060)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
Ski2_N
ResIII
DUF1922
AAA_16
Motif
Other DBs
NCBI-GeneID:
145570060
NCBI-ProteinID:
XP_081485175
LinkDB
All DBs
Position
12:complement(3487503..3505630)
Genome browser
AA seq
1351 aa
AA seq
DB search
MDRVAVANDLSFRVGLTGHSAHLSIEPLPPVQSHNPLHDLPQFILPPAFPEETTESIKEY
IEEKYLIPRLDPDEFSPEKAGRDWNFDWFSKAKIPVEPSLPRTAVFPEWELPFRRHKGQE
QGIWEPQSVQVEISELTAGIEDSSALPRITGPAKDFVRGSLHSRPFHPGGLDGSQSLPRV
VPEGSLNGDWIREVLEGGPAEKIPPSFKQGLDSGDLKAYPSSWSVNERHASPKVVSDEKQ
SKLSLQFDDMFKRAWEDDFAENDESDGIESEAESNESEIQVNETEHEGDVPDVKLSELDQ
ILSVDSAVLDIKADVKNEEGDNQGKESWAIRESNNGIADRFHELVPDLALEFPFELDRFQ
KEAIYYLERGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFTG
KFDVGLLTGDISLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDAERGVV
WEEVIIMLPRHINFVLLSATVPNTIEFADWIGRTKQKIIRVTGTTKRPVPLEHCLFYSGE
LYRICENEKILEQGLKAAKDAYKKKNSNTARSGPTMHSGSAAGSGAANAQNRENSHRGKQ
KHSGSRNSGNFNGMGSGNFTSGSQPNLGLRRPDASLWLQLVNKLLKKSLLPVIIFCFSKN
RCDRSADSMMSIDLTSSVEKSEIRVFCDKAFSRLKGSDRNLPQILRVQSLLRRGIGVHHA
GLLPIVKEVIEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEYRQIIPGEY
TQMAGRAGRRGLDKFGTVIIMCRDEILEERDLRHVIVGHPTKLESQFRLTYIMILQLLRV
EELKIEDMLKRSFAEFHTQKKLPEKQQLLMLKLSQPEKTVECIKGEPSIEDYYKMYTEAE
SYLNQITEGVMQSHTAQQFLVPGRVVVVKSQTSQDHLLGVVVKAPSASLKKYIILVLKPE
LPPTMQSPIGSGAVLDIGSNKSGEGFFVLPKGKRALDDEYCSSVTARKGTGVINIKLPYQ
GVAAGVNYEVREVDNKEFLCICNCKIKIDQVRLLEDVSTAAYSKTVQQLSEKKPNGSKYP
PALDPKKDLKLKDMELVEAYHKWDKLLQNMTENKCHGCIKLDEHMKLVKEIFKYRDEVND
LTFQMSDKALQQMPDFHGRINVLKEIGCIDDDLVVQIKGRVACEMNSGEELICTECLFEN
QLENLEPEEAVAVMSAFVFQQKNTSEPSLTPKLSAAVQRLYDTAIRLGQLQASFQLPVDP
EEYARENLKFGLVEVVYEWAKGTEFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIM
GNSALHKKMEAASNAIKRDIVFAASLYITGI
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atggatagagtagcagtagctaacgatttgtcatttcgggtcgggctcacgggtcacagc
gcccatctttccatcgaacctcttcctccggttcaatcccacaatcctctccacgacctt
cctcaattcattcttccgcctgcatttcctgaggaaacaacagaatctattaaggaatat
atagaggaaaagtatttaataccaagattggaccccgatgagttctcccctgagaaagct
ggaagagactggaattttgactggttcagcaaggccaaaatacctgtggaaccatcatta
cctcggacagctgtgtttcctgaatgggagcttccatttaggcgccataaaggacaggaa
caaggaatttgggagcctcaatccgtacaggtggagatttcagaattaactgcagggata
gaggactctagtgctttgccacgaattactgggccagcaaaggactttgtgagggggagc
cttcacagtcgcccttttcatccaggtgggttagatggatctcagtctctgcccagggtt
gttcctgagggttcattgaatggtgactggattcgcgaggttcttgagggtggtcctgca
gaaaaaattcctccaagctttaagcaaggattggattctggtgatcttaaggcatatcct
tcttcatggagtgtgaatgagcgccacgcttctccaaaggttgtatcagatgagaaacag
agtaaactgtcactgcaatttgatgatatgttcaagagagcatgggaagatgattttgct
gaaaatgacgagtctgatggtattgaatcagaagcagagtctaatgaatcagagatacaa
gtcaatgaaactgaacatgaaggtgatgttccagatgttaaattatcggaattagatcaa
attttgtctgtggactctgctgtgttggatataaaggcagatgtgaaaaatgaagaaggt
gacaatcagggtaaagagtcctgggctatccgtgaaagcaacaatggtatcgcagatcgc
tttcatgaacttgttcctgatttggctctcgagtttccgttcgaattagatagattccag
aaggaggctatctactatcttgaacgaggggaatctgtttttgtggcagctcatacatct
gctggaaagacagttgttgctgaatatgcatttgcattggcatcaaagcattgcactaga
gcagtgtacacagctccaatcaagacaatcagcaatcagaaatacagagatttcactgga
aaatttgatgttggccttctcactggcgatatcagcttgaggccagaggcgtcctgcctc
atcatgactactgaaatattgaggtcaatgttgtatagaggtgctgatattatccgtgac
attgaatgggttatatttgatgaagtgcattatgtcaatgatgctgaaagaggtgttgtc
tgggaagaagttataataatgcttcctcgtcacattaatttcgttctcctctctgccaca
gttccaaatacaatagaatttgccgattggatcggcagaacaaagcagaagatcatccgt
gttactgggaccactaagagaccagtcccgttggagcactgcctgttttactcaggagaa
ctctacagaatttgcgagaacgaaaaaattttagaacagggcctgaaagctgctaaagat
gcatacaagaaaaagaattccaatacagccagaagtggccctacaatgcattcaggatct
gcagctggttctggtgcggctaatgcccagaatcgtgaaaattctcatcgtgggaaacaa
aagcattctgggtctcgtaattctgggaacttcaatgggatgggctcagggaactttaca
agtggaagccaacccaacttgggcttgagaagaccagatgcttctttgtggttacaactt
gtgaacaagctcttaaaaaaatcacttttaccggtaatcatattttgcttttcaaagaac
cgttgtgatcgatcagctgatagtatgatgagtatagatcttaccagtagtgtggaaaag
agtgaaattcgtgttttctgtgacaaagcattttcgcggctgaagggttctgaccgaaat
ttacctcagattctccgagttcaaagtctgcttcgtaggggtatcggtgtccatcatgct
gggcttctccctatcgtgaaagaagttattgaaatgctattctgccgtggtgtaattaag
gttctattttcaacggagacatttgctatgggtgtcaatgctcctgccagaacggttgtt
tttgatactttaagaaagtttgatggaaaggaatacaggcagataattccaggggaatat
acacagatggctggtcgtgctggcagaagagggcttgataagtttggaacagttataata
atgtgccgtgatgagattctagaagaacgagatctgagacacgttattgttggacatccc
accaaactcgaatctcaattccgactaacttatattatgatcttgcaattacttcgtgtt
gaagaattgaagatagaagacatgttaaagaggagctttgctgaatttcatactcaaaag
aagcttcctgaaaagcaacaacttctgatgttaaaactttcacagcccgaaaaaacagta
gaatgcataaaaggtgaaccatctatcgaggattattataagatgtatacagaggctgag
agttatttgaaccagataacagagggtgtcatgcagtctcatactgcacagcaattcctt
gtgcctggaagagtggtagttgttaagtctcaaacgtctcaggaccatttacttggtgtg
gtggtaaaagcaccgtctgccagcttgaagaagtacataattctagttttgaaacctgaa
ttacctccaacaatgcaatcccctattggcagtggtgcagtccttgacatagggagtaac
aaatctggagaaggtttctttgtgttgcccaagggaaaacgtgctttagacgatgagtac
tgttcttctgtcactgctcgcaagggtactggtgtaatcaacataaaattgccttaccag
ggggtggctgctggtgtgaattatgaggtcagagaagtggacaataaagagttcctttgc
atctgcaattgcaaaataaagattgaccaagttcggcttcttgaagatgttagcactgct
gcctattcaaaaactgttcagcagctttctgaaaagaaacccaatgggagtaaatatcct
ccagcattggatcctaagaaggatctgaagctgaaagatatggaacttgttgaagcttac
cacaaatgggacaagttattgcagaacatgactgagaacaagtgccatggatgtataaag
ttggatgaacatatgaaattagttaaagagattttcaagtacagagatgaagtcaatgat
ttgacgtttcaaatgtctgacaaagcacttcaacagatgcctgactttcacggacggata
aatgttctcaaggaaattggctgtatagatgatgaccttgtagttcagatcaaaggacgt
gttgcttgtgaaatgaactccggagaggagcttatatgcactgagtgtttgtttgagaac
cagttagagaacctggaaccagaagaagcagttgctgtaatgtctgcatttgtttttcag
cagaagaacacttctgagccttctcttactcccaagctatctgctgcagtacagagatta
tatgatacagccatcagactgggccagttacaggcaagctttcaactcccagttgaccct
gaggagtatgctcgggaaaatcttaagtttggtcttgttgaagtggtttatgaatgggca
aagggcacagaatttgctgatatttgtgagctgacagatgttcctgaaggcttgatagtg
agaacaatagttcgacttgatgaaacatgtcgagaattcagaaatgctgcagctattatg
ggaaactctgctctgcacaagaaaatggaagctgcttcaaatgccatcaagcgtgatatc
gtctttgcagctagcttgtacatcacaggaatctga
DBGET
integrated database retrieval system
