Chenopodium album (lamb's quarters): 145591118
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Entry
145591118 CDS
T11950
Symbol
LOC145591118
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
calb Chenopodium album (lamb's quarters)
Pathway
calb03013
Nucleocytoplasmic transport
calb03015
mRNA surveillance pathway
calb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
calb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
145591118 (LOC145591118)
09122 Translation
03013 Nucleocytoplasmic transport
145591118 (LOC145591118)
03015 mRNA surveillance pathway
145591118 (LOC145591118)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calb03019
]
145591118 (LOC145591118)
03041 Spliceosome [BR:
calb03041
]
145591118 (LOC145591118)
Enzymes [BR:
calb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
145591118 (LOC145591118)
Messenger RNA biogenesis [BR:
calb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
145591118 (LOC145591118)
Spliceosome [BR:
calb03041
]
Complex C
Other components
EJC/TREX
145591118 (LOC145591118)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
145591118 (LOC145591118)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
145591118
NCBI-ProteinID:
XP_081503646
LinkDB
All DBs
Position
18:1301877..1307414
Genome browser
AA seq
428 aa
AA seq
DB search
MGETKENDAYEEELLDYDEEEEKVPDPAVTKANGEAAKKGYIGIYSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPGIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKAIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLARYKGFKDGKQRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaccaaagaaaatgatgcttatgaagaggagcttcttgattacgacgaggaa
gaagagaaggttccagatcccgctgtcaccaaagctaacggcgaagccgctaaaaagggt
tacattggaatctacagttcaggattcagagacttcttgctgaagccagagctgctgcgc
gcaattgtcgactctggttttgagcatccatctgaagtgcaacacgaatgtattcctcaa
gctattttgggtatggatgtcatctgccaagccaaatctggtatggggaagactgctgtc
tttgttctctcaaccctgcaacagattgatcctgtggctggacaagttgctgcacttgtt
ctttgtcacactagagaattggcatatcagatatgtcacgagttcgagaggttcagcaca
tatttacctggtattaaggttgctgttttctatggaggtgtcaacataaaaattcacaag
gatctgctcaagaatgaatgccctcatattgtggtgggtactcctggaaggatccttgca
ttggctagagacaaagatctgtcactaaagaatgtcagacactttattcttgatgagtgt
gacaagatgctcgagtcccttgacatgaggagagatgtgcaagagatctttaaaatgaca
ccccatgacaagcaagtgatgatgttttctgcaactctaagcaaggcaatccgacctgtt
tgcaagaaatttatgcaagatccgatggaaatatatgtggatgacgaagccaaattgacc
cttcacggtcttgtacagcactacatcaaattgtccgagttggagaagaatcgcaagctg
aacgacctgttggatgctttggatttcaatcaagttgtcatttttgtcaagagtgtcagt
agggctgctgagttgaacaaacttcttgtggagtgcaacttcccttcgatctgcatccat
tctggcatgtcccaggaagaaagattggctcgttacaagggatttaaggatggcaaacaa
agaattcttgttgctacagatttagtcggcagaggaattgacattgaaagagtgaacatt
gttattaattatgacatgccagattcagcagacacatatctgcatcgggttggccgagct
gggaggttcggaactaagggacttgcaattacgtttgtggcatctgcttcggactctgat
gtattgaatcaggtacaagagaggtttgaagtcgatattaaagaacttccagagcagatc
gacacttcgacatacatgccatcatga
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