Chenopodium album (lamb's quarters): 145592532
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Entry
145592532 CDS
T11950
Symbol
LOC145592532
Name
(RefSeq) tetratricopeptide repeat protein SKI3-like
KO
K12600
superkiller protein 3
Organism
calb Chenopodium album (lamb's quarters)
Pathway
calb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
calb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
145592532 (LOC145592532)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
calb03019
]
145592532 (LOC145592532)
Messenger RNA biogenesis [BR:
calb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
145592532 (LOC145592532)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_14
TPR_16
TPR_17
TPR_8
TPR_12
TPR_CcmH_CycH
TPR_9
TPR_7
CFAP70_TPR_C
ARM_TT21_C
TPR_19
BTAD
DUF6584
TPR_NPHP3
ARM_TT21_4th
NTF2
Motif
Other DBs
NCBI-GeneID:
145592532
NCBI-ProteinID:
XP_081505158
LinkDB
All DBs
Position
18:50618548..50634370
Genome browser
AA seq
1174 aa
AA seq
DB search
MNMNMNVTEENQEIQLKTLEELADSHPDDPSHQFNLGKLIWERGEEWREKAAEHFLKAAK
LNPQNGEAFRFLGHYYTCVCLDTQRALKCYQRAVTLNPDDSQSGEALCDLLDKSGKESLE
IAVCREAFGKSPRAFWAFARLGLLMVHQNKWSEAVQSLQHAIRGYPTCADLWEALGLAYQ
RLGMYTAAIKSYGRAMELENSKAFAMIETGNIFLMLGSYRKGIEQFQHALEICPQSACAQ
YGLASGLLALSQECIKQGAYSWATSLLEEASEVAKNSAVLTSNMSCVWKLHADIQLTYAK
SFPWTEGGNLKGEEAFSRSLLSWKKTRQIAAVSAKCSYQRALHLAPWQANIYMDVAVALD
HVCSLQGSHETDLSSWKISEKMLLGSLLLESDNHEFWMALGCMSDHRALRQHAFIRGLHL
DVSLASAWAYLGKLYKEEGESQLGRQAFDRARSIDPSLSLPWAGMSADTLIRETASDEAY
DSCLRAVQILPLAEFQIGLAKLALRSNNLLSSEVFGSIRQALQCAPWYPESHNLNGLVSE
ARHDYQSAIVSYQLARYAWKTSTLFLSHSHFVDISINLARALCKAENVLEAVQELEDLKE
RGFLDVEGLQVYALSLWKLGKNDMSLSAAKDLATCVPTMKLSTAVASISLICCLLYSISG
VGSTINNILQMPRELLQSAKVSFIISAVDAVDQSCQLQSLVSSSRRILSTQEEIMEMHLL
IALSKLIRNGDGHSLSLQSGIDHLRKALHMYPNGISIRNMLGYLLLSRKQWENDHVVRRC
CAVVPFNSIKQDFRSAHEIIGAEAVACHATYSCKSKYSLSTCKYQNVHGASLMGLMQRWL
RLEPWNHNARYFLVLNLLQTACQAKCPQHLLNVLKRMTSVAVTSQLSLNKTFERYKRFQL
LLCSSELNLLGGDMSSSVSLARDASNLSLSDANTFFAHLQLCRAHAAEDNQTSLNVEFTK
CLKLKTNYPIGWISLKIIESRHRPQNGSTFLDSGFRDSIKEIKESENSWLAVYKLFCGLA
SQWAQDFLRAEEFLAEACSLAPTESCFFLCHGAICMELTKMQYGSQYLTMGIRSLKKAQG
MSSIQLPFVSLLLAQAEASLGSKLKWDSNLQLEWYSWSPETRPAELYFQMHLLALGSGTT
SSQDYGDPLNWVLRAIHLNPSCLRYWRVLRKLAE
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaatatgaatatgaatgttacggaggaaaaccaggaaattcaattaaaaaccctcgaa
gaactcgcggattctcacccagatgacccttcccaccagtttaatcttgggaaattgatt
tgggaaagaggagaagaatggagagaaaaagctgcagagcattttctcaaggcagctaaa
ttgaatccccaaaatggggaggcattcagatttttaggtcattactatacttgtgtttgt
ttggatactcagagagctctcaaatgctaccagcgtgctgttacgctaaatcccgatgat
tcgcaatccggggaagcattgtgtgatttactggacaaaagtggaaaagagagcttagag
attgctgtgtgcagggaggcgttcgggaagtcaccccgtgccttttgggcatttgccaga
ctaggtttgctgatggtgcatcaaaacaagtggtctgaggcagttcagagtcttcagcat
gccatcagaggctatccaacctgtgccgatctctgggaagcgttaggtcttgcctatcaa
cgacttggcatgtatactgctgccattaagtcttacgggagagcaatggaattggaaaat
tcaaaagcctttgctatgattgagactggaaatatctttctaatgcttggttcgtatcgg
aagggaattgagcaatttcaacatgctctggagatatgccctcaaagtgcatgtgcacag
tatgggctggcttctgggcttcttgctctatcacaagaatgcattaagcagggtgcatat
tcatgggcaacatctctattggaggaggcatctgaagttgcaaaaaatagtgctgttttg
accagtaatatgtcatgtgtatggaagctacatgctgatatacagcttacttatgcaaaa
tcatttccatggacagaaggtggtaatctgaagggcgaggaagccttttctaggtctctt
ctttcctggaaaaaaacacgccaaatagctgctgtgtcagccaaatgttcctaccagcgg
gctttgcacttagctccatggcaagcaaatatatatatggatgttgctgtggctcttgat
catgtttgctctttacaggggagtcatgaaactgatttgagctcctggaaaatatctgag
aagatgctgttaggaagcttgctacttgagagtgacaatcatgaattttggatggcattg
ggatgcatgtctgatcatagggcattgagacaacatgcctttatccgagggttgcatttg
gatgtatctctagcttctgcatgggcttatctcggcaagctatacaaagaagaaggtgaa
agccaattgggaagacaagcctttgacagggctcgaagtatagatccttctctttcattg
ccatgggctggcatgtcagcagatacgcttatcagggaaactgcatcagatgaggcttac
gacagttgcttacgagccgttcaaatattgcctcttgctgagtttcagattggccttgca
aaacttgctctacgttcaaacaacctattatcttcagaggtatttggatctatcaggcaa
gcgttgcagtgcgctccttggtatcctgagtctcataatctgaatgggctagtttccgag
gcacgacatgattatcaatctgctatcgtttcttatcagctagcacgttatgcatggaag
acttctacacttttcttgtctcattctcattttgttgatatatcaattaatctggctagg
gcactctgcaaggcagaaaatgtactagaagctgtgcaagaattggaagatctgaaggaa
agaggttttcttgacgttgaaggccttcaagtatatgctttatcattgtggaaacttggc
aagaatgatatgtctctatctgctgctaaagatcttgctacatgtgttcccaccatgaag
ctgtccactgcagtggcatctatttctttaatttgctgtcttctgtactccatttccggg
gtaggatcaactatcaataacattttgcaaatgcctagggagctgcttcagagtgcaaaa
gtcagtttcatcatatctgctgtagatgctgttgatcagagctgtcaattacagtcttta
gtctcaagtagccgccgtatcctttcaacacaggaagagattatggaaatgcatttgctg
attgcactaagtaaactaataagaaatggagatggacattctctcagtttacaaagtggc
atagaccatcttagaaaggcattgcatatgtaccccaatggaatttctataagaaatatg
ctcggatatcttttgttatcgcgcaaacaatgggaaaacgaccatgttgtaaggaggtgc
tgtgctgttgttccgtttaactcaataaagcaagacttcagatctgcgcatgaaattatt
ggtgccgaagctgttgcttgtcatgctacttacagctgcaaatcgaaatactctctttca
acatgtaaataccagaatgtgcatggtgcatcactaatggggttaatgcagagatggctt
cgtcttgaaccttggaaccataatgctagatactttctagtacttaatttgcttcaaaca
gcatgccaagcaaaatgtccgcaacaccttttgaacgtgctcaagcggatgacttctgta
gctgtcacgagtcagttatctttgaataagacatttgaaagatataaaagatttcagctg
cttctgtgttcctctgagctcaatttgcttggtggagatatgtcaagcagtgtttctctt
gcaagggatgcatcaaacctttcgctttctgatgccaataccttttttgcccatttacaa
ttatgccgcgctcatgctgctgaagataaccagacaagtctcaatgtagagtttacaaag
tgcttgaagcttaaaactaattaccctattggttggattagtcttaagattattgaatct
cgtcatagaccccagaatggttccactttcttagattcaggctttagagatagtattaaa
gagatcaaggagtcagagaattcatggttggctgtctacaaactgttttgtggtttagct
tctcaatgggctcaagattttctacgtgcagaggagttccttgctgaagcttgttcacta
gcacctactgagagctgcttcttcctgtgccatggtgctatctgcatggagcttacaaaa
atgcaatacggctctcagtacctgacaatgggtataagaagtcttaaaaaggcacaaggg
atgtcctccattcaattgccatttgtttcccttttgttggctcaagcagaggcaagcctt
ggatcaaaattgaagtgggatagtaacctccaattggaatggtattcttggtcaccagag
acgagacctgctgaactctattttcaaatgcatctgcttgcacttgggtctggaaccaca
tctagtcaagattatggagatccgctcaactgggttcttcgagctattcacttgaatcct
tcttgcttgaggtattggagagtcctgcgcaagcttgctgagtga
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