Chenopodium album (lamb's quarters): 145597658
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Entry
145597658 CDS
T11950
Symbol
LOC145597658
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24-like isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
calb
Chenopodium album (lamb's quarters)
Pathway
calb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
calb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
145597658 (LOC145597658)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
calb03041
]
145597658 (LOC145597658)
Enzymes [BR:
calb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
145597658 (LOC145597658)
Spliceosome [BR:
calb03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
145597658 (LOC145597658)
Complex B
145597658 (LOC145597658)
Complex C
U2 SnRNP specific factors
145597658 (LOC145597658)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
145597658
NCBI-ProteinID:
XP_081510002
LinkDB
All DBs
Position
20:41524737..41529111
Genome browser
AA seq
774 aa
AA seq
DB search
MSKRKFGFEGFGINRQQTYNFERSQQQPQRLYTPPSSSSRPHDHHEDTDVDNIDFDDGSN
NNVSDAGNLAGDEEIDPLDAFMEGIHKEVSEAPPPKPKEKLDKYRDDDDEEDDPMESFLR
AKKDVGLTLASDALRAGYDSDEEVYAAAKAVDAGMVEYDSDDNPIVLDKRKIEPITALDH
SEIDYEAFNKDFYEEKPSISGMSEQDVTEYRNALKIRISGFDVPRPVKTFDDCGFPQPLM
SAITKQGYEKPTNIQCQALPIVLSGSDIIGIAKTGSGKTAAFVLPMIVHIMDQPELGKGE
GPIGVICAPTRELAHQIYLETRKFAKPYGLRVSAVYGGMSKLDQFKELKAGAEIVVATPG
RLIDLLKMKALTLKRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKV
EKLAREILSDPVRVSVGEVGMANEDITQFVQVLPSDAEKLPWLLEKLQGMIDEGDVLVFA
SKKASVDELESQLAQKGFKVASLHGDKDQASRMEILQKFKSGIYHVLIATDVAARGLDIK
SIKSVVNFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGEMVNSLIAAGQNV
SVELMDLAMKDGRFRSKRDARKGGGKKGKGRGGGRGGGGGGGRGVRGVDFGLGIGYNTES
NSAPSQTPSRTAAVNSLRTGMMAQFKSSFVAASPDSQNQATNNSNVYANKRPAMTGFVSG
GTIGGDTNRPQATPTTNFMPASGGSIGGQNSDQKSNESSRERQRERRRPSGWDR
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagcgcaaattcggcttcgaaggcttcggaatcaatcgccaacaaacctacaac
ttcgaacgatctcaacaacaacctcaacgcctctacactcctccttcttcttcttcgcga
cctcatgaccaccacgaagataccgacgtcgacaacatcgacttcgacgacggtagcaac
aacaacgtttccgacgccggaaatctcgccggcgacgaagagattgatccattggacgct
tttatggagggaattcataaggaagtgagtgaagcgcccccgccgaagccgaaagagaag
cttgataagtatagagatgatgatgatgaggaggatgatccaatggagagttttttgagg
gcaaagaaagatgtagggttaacattggcgtcggatgcgcttcgagccgggtacgattcc
gatgaggaggtttacgctgctgcgaaagcggttgatgctggaatggttgagtatgattct
gatgataatccgattgtgcttgataagaggaagattgagcctattactgcattggatcat
agtgagattgattatgaggcgtttaataaggatttttatgaggagaagccttcaatttct
ggcatgagtgagcaggacgtcacagagtaccggaatgccttgaaaattcgtatttctggt
tttgatgttccacggccagttaaaacttttgacgattgtggcttccctcaaccactgatg
agtgcaatcacaaaacaaggttatgaaaagcctaccaacatacaatgccaagctttacca
attgtgctgtcaggaagtgatataattggtatagcaaagactggttctggaaaaactgct
gcttttgtgcttcctatgattgtgcatataatggatcagcctgagctgggcaaaggagaa
ggaccaatcggagtgatatgtgcacccaccagagaattagctcatcagatatatttggaa
actagaaaatttgcaaaaccttatgggttacgtgtgtctgcagtctatggtgggatgtcc
aagcttgatcagtttaaagaactcaaggcaggagccgagattgttgttgctactcctggg
agactgatcgatttgctgaaaatgaaggcattaacgttgaagagagcaacatatctggtg
cttgatgaggcggatcgaatgtttgaccttggttttgagccacaaataaggtctattgtt
ggtcagatcaggccagaccgtcagactttactcttttcagcaacaatgccccgaaaagtg
gaaaagttggcaagagaaattctttctgatcctgtacgtgtttcagtgggggaggtaggc
atggcaaatgaagatataactcagtttgttcaagtgcttccatcagatgcagaaaagtta
ccttggctcttggaaaagctgcaaggaatgattgatgaaggtgatgttttggtttttgct
tccaaaaaggcctccgtagatgaacttgagtcccagcttgcacagaaagggttcaaagtt
gcttctcttcacggtgataaagatcaggcttctcggatggagattctgcagaaatttaag
tccggaatataccatgttcttattgctaccgatgttgctgctcgaggtctggacattaag
tcgatcaagtcagttgtcaactttgacattgcaaaagatatggatatgcatgtgcatcgc
attggtagaacaggtcgtgctggtgataaagacggagtcgcatacactctcatcacacaa
aaagaggccaggtttgctggggaaatggtcaacagtttgatcgctgctggccagaatgtg
tccgtggaactgatggatcttgccatgaaggacggaagattcaggtctaaacgtgatgca
aggaaaggaggtggaaagaagggaaaagggagaggaggaggacgaggaggtggaggtggt
ggtggtagaggtgtccgtggagtggattttggtttgggcattgggtataatacagaatcc
aacagtgctccctctcaaactcccagtcggactgctgcagttaattcacttaggactggt
atgatggcacagttcaagagcagctttgtggctgcttcacctgactctcagaatcaggcg
acaaacaattcgaacgtgtatgccaacaagcgcccagctatgactggttttgtttcgggt
ggtaccattggtggggacaccaacagacctcaggcaacccctacaacaaatttcatgcca
gcatccggagggagcatcggtggtcagaattctgatcagaagagcaatgaaagctcaaga
gaaaggcaaagggaaaggcgaaggccctcaggctgggatagatag
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