Chenopodium album (lamb's quarters): 145601262
Help
Entry
145601262 CDS
T11950
Symbol
LOC145601262
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14-like isoform X1
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
calb Chenopodium album (lamb's quarters)
Brite
KEGG Orthology (KO) [BR:
calb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
calb03400
]
145601262 (LOC145601262)
Enzymes [BR:
calb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
145601262 (LOC145601262)
DNA repair and recombination proteins [BR:
calb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
145601262 (LOC145601262)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
DExH14_plug
ResIII
Helicase_C
AAA_19
DEXQc_Suv3
Motif
Other DBs
NCBI-GeneID:
145601262
NCBI-ProteinID:
XP_081513370
LinkDB
All DBs
Position
2:77207808..77241945
Genome browser
AA seq
2087 aa
AA seq
DB search
MVLQLPRLTNSLRDPFDIDRAYLHRKTLLQNLFPTSNANSVDESELARKIVFDWEQASTE
VRQAYKQFIGAVVELIGGEVVSDEFREVALTVYRLFGVRGEEEEEEDSRMLAEKKSELQK
LLGYTVSEGSLRKVVQLAQRLCSLQPRTASPNMDGNLIDDDVEFGSNLDFRPPSRFLLDI
TLDDEEILGPEDLAPSTSVYNDWPATDADNNRFSNGGIKYDLKWLRDSCDLIVRGSGSQL
SRDELAMTICRVLDSDKHGEEIAGDLLDLVGDSAFETVQELILHRKQLVEAISHGLLVLR
SDKSPSNAQPRMPSYGTQVTVHTESEKQIDKLRRKEEKRHKRGVGQGIEDDFSSTSFSSL
LEASERKNLFDDVIGSGPGPQSLGVSALPQGTVRKHFKGYEEVIIPPIPTAPMKPGERLI
EIKELDEFAQAAFHGYKSLNRIQSRIFQTVYYTNENILVCAPTGAGKTNIAMISILHEIG
QHFKDGYLHKNEFKIVYVAPMKALAAEVTATFSHRLAPLNMTVKELTGDMQLSKNELEAT
QMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQ
SMIRIVGLSATLPNYLEVAQFLRVNPDSGLFFFDSTYRPVPLAQQYIGISEKNYMARTEL
LNKICYYKVVESLKQGHQAMVFVHSRKDTGKTAERLVELAREDNNLELFQNETHPQFHLI
KKEVMKSRNRELVGLFDSGLGIHHAGMLRSDRGLTERLFSDGLLKVLVCTATLAWGVNLP
AHTVVIKGTQIYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAHYLRL
LTNQLPIESQFINSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMKMNPLAYGIGWDE
IVADPSLGLKQRSFITDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIHYSSVETYN
EMLKRHMSDSEVIDMVAHSSEFENIVVRDEEQMELENLARECPLEIKGGPSSKHGKISIL
IQLYISRGSIEAFSLISDAAYISASLARIMRALFEICLRRGWSEMSAFMLEYCKAVDRQI
WPHQHPLRQFDRDISLEILRKLEDRGADLDRLYDMEEKDIGALIRFVPGGKTVKQYLSFF
PMVLLSATVSPITRTVLKVDLLVTPDFIWKDRFHGTAQRWWILVEDSENDHIYHSELFTL
SKRTARADPQKLSFTVPIFEPHPPQYYIRAVSDSWLQSESFYTISLHNLALPESHTSHTE
LLDLKPLPITALGNSMYESLYSFSHFNPIQTQAFHVLYHTDNNVLLGAPTGSGKTISAEL
AMFHLFNSQPDMKVIYIAPLKALVRERMKDWKRRLVTQLGKKMVEMTGDFTPDLMALLSA
DIIISTPEKWDGISRNWHTRSYVKKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTE
RSVRFVGLSTALANAGNLADWLGVGEVGLYNFKPSVRPVPLEVHIQGYPGKFYCPRMNSM
NKPAYAAICSHSPTKPVLIFVSSRRQTRLTALDLIQYAASDEHPRKFLNIPEDALQMILS
QISDQNLRHTLQFGIGLHHAGLNDKDRSVVEELFGNNKIQVLVSTSTLAWGVNLPAHLVI
IKGTEFYDGKSKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPF
PVESSLREHLHNHFNAEIVSGTISHKEDAIHYLTWTYLYRRLTVNPAYYGLEDINPVVVS
SYLSRLVQSTFEDLEDSGCIKMVEDSVEPMILGSIASQYYLSYLTVSMFGSNLGPGLSLE
VSLHILSAASEYDELPVRHNEENHNATLAERLPYKVDKNRLDDPHVKANLLFQAHFSQLE
LPVSDYVTDLKSVLDQSIRIIQAMIDVCANSGWLSSTLNCMHLMQMVMQGLWFDNGSALQ
MLPCLNNNVMVTLTRQGISNVQQLLDVPRATMQGLLGSFPASSLYEDLQRFPRIHVKLRL
KKKNERASSSSLNVRLENVNAKRKTPRAFTPRFPKVKDEAWWLVLGNTVSSELYALKRVS
FADHLVTNIDFPSDLVICQGLKLILVSDCYLGYELEYSLEELLRDQP
NT seq
6264 nt
NT seq
+upstream
nt +downstream
nt
atggtgcttcaactccctcgactcaccaactctcttcgagaccctttcgacatcgatcgt
gcttatcttcatcgcaaaactctcctccaaaacctctttccaactagtaatgccaattca
gttgatgagtcggaattagcgcgaaagattgtttttgattgggaacaagcttctactgaa
gtgcggcaagcgtacaaacagtttattggcgcggttgttgaactgattggtggagaagtt
gtgtcggacgagtttcgtgaagtggcattgactgtgtatcgactctttggtgtccgaggg
gaggaggaggaggaggaggatagtagaatgctcgccgagaaaaagtctgaattacaaaaa
ttactgggttatactgtttctgaaggtagcctgcggaaagtagttcaattggctcagaga
ctatgtagtctgcaacctagaacagcttcacctaatatggatggaaatttgattgatgat
gatgtagagttcggatctaatcttgattttagacctccttcacggtttttgcttgatatt
actttggatgatgaagaaattttggggccagaggacttggctccatcgacttcagtgtac
aacgattggcctgcaactgatgctgataacaaccgtttttcaaatggtgggataaaatat
gatttaaaatggttaagagactcatgtgatctaatagttcgaggaagtggctcacagctt
tctcgagatgaactggccatgacaatttgtcgagttctcgattctgacaaacatggggaa
gagattgctggtgatctactggatcttgttggggatagtgcttttgagactgttcaggag
cttatcttgcatagaaaacagcttgttgaagcaattagtcatggcctgctagtattacga
tctgataagtcgccttcaaatgctcaaccgcgcatgcctagttatggcactcaggtcact
gtgcacactgagtctgagaaacagattgataaacttaggcgcaaagaggagaaacgccac
aagcgtggagttgggcaagggatcgaagatgacttttcctctacaagtttttcatccttg
ctggaagcaagtgagaggaaaaatctatttgatgatgtgattggaagtggaccaggacct
cagtcattaggtgtttctgcacttccacagggaactgtgagaaagcatttcaaaggctat
gaagaagtcataattcctccaataccaacagctccaatgaagcctggggaaagactgata
gagataaaagaattagatgaatttgcccaagctgcttttcatggatacaaatccctcaat
cgtatccagagcaggatctttcagacagtctactacactaatgagaatattctagtatgt
gccccaacaggagctggcaaaacaaatatagctatgatttctattctacatgagattgga
cagcatttcaaggacggttacctgcacaaaaatgagttcaagattgtttatgttgctcca
atgaaggcattagctgctgaagttacagctacatttagccatcggttagctccattaaat
atgacagtaaaggagcttacaggagacatgcaactttctaagaatgaacttgaagcaact
cagatgatagtgaccacacctgaaaaatgggacgtcatcacgcgcaagagcagcgacatg
tcactttcaatgcttgttaagcttttaataattgatgaagtacaccttttgaatgatgat
agaggtcctgttatagaagcattagttgctcgtactcttcgtcaggtcgagtcaactcaa
tcaatgattcgcattgtgggtctctcagccactctacctaattatttggaggtggcacaa
tttttgagggtgaatccggactcggggctctttttctttgattctacctaccgtcctgtg
cctcttgcacagcagtacattggtatcagtgagaaaaactatatggctcgcactgagctg
ttgaacaagatttgctactacaaggttgttgaatccctaaagcaaggtcatcaagcaatg
gtctttgtccattcacgcaaagatactgggaagactgctgaaagactggttgagcttgcc
cgagaggacaataatctagagctttttcagaatgagacacatccacagtttcacttgata
aagaaggaggttatgaagtctagaaacagagaattagttggactctttgattctgggtta
ggtattcaccatgctggaatgcttcgttctgataggggtcttactgagagacttttttct
gatggattgctaaaggtgcttgtctgcacagcaactttggcatggggagttaacttacct
gctcacactgttgtgatcaagggcacacaaatatatgatccaaaggctggtggttggcgg
gacttaggcatgcttgatgttatgcagatctttgggcgtgctggaaggcctcagtttgac
aaaagtggtgaaggcattatcattacatctcatgacaagttagcccattacctgcggcta
cttactaatcaactccctattgaaagtcagttcatcaactccttgaaagataatttgaat
gctgaggttgcgctgggtactgtcacaaatgtgaaagaagcttgtgcttggcttgggtat
acctatctatttataaggatgaagatgaatcctttggcatatggtattggatgggatgag
atagttgcggatccttctttgggtttaaaacaaaggtcatttataactgatgctgctcgt
gcccttgataaagcaaagatgatgcgttttgatgagaaaagtggcaatttttactgtact
gagcttggtcgtattgcaagtcatttctatatacattattccagtgtggaaacttacaat
gaaatgttgaagcgacatatgagtgatagtgaggttattgacatggttgcacattcttct
gagttcgaaaatattgttgtaagagatgaagaacaaatggaattagaaaatttagcacgt
gaatgccccttagaaattaaaggtggtccctccagtaaacatgggaaaatttctatcctc
attcagttatacatatcacgtggatccatagaggctttctcattgatttctgatgctgca
tatataagtgcaagtttggctcgtattatgcgtgctttatttgagatatgcttgcggaga
ggatggtctgagatgtcagcgttcatgttagaatactgtaaggctgtagatcgtcaaatc
tggcctcatcagcatccactcagacaatttgatagggatatctccttagagatcttgagg
aagctcgaagatcgaggggctgatctggatcgcctttatgatatggaagaaaaggatatt
ggagctctgattcgttttgtacctggagggaagacagtgaagcaatatttgtcatttttt
ccaatggtcctgttatcagccactgtcagtcctatcacgagaactgtcttaaaggttgat
ttacttgtaactcctgatttcatttggaaggatcgttttcatggaactgctcagcggtgg
tggattcttgttgaggattcggaaaatgaccatatatatcattcagagctgttcacactt
tcgaagagaacagcaagagcggatcctcaaaagctttcttttaccgtgccaatatttgaa
ccgcatccaccacaatattatatacgtgctgtttctgactcttggcttcaatcagaatct
ttttacactatatctcttcacaatcttgctttgcctgagtctcacacttcccatacagaa
ctgcttgatttaaaacctcttccaataaccgcgcttggtaatagtatgtatgaatccttg
tacagcttctcgcacttcaatccaattcagacacaggcttttcatgtcctgtatcacaca
gacaacaatgttctcttaggagctcctacaggaagtggaaaaactatatcagctgagctt
gcaatgtttcacctattcaattctcagcctgatatgaaggttatatatatagcacccttg
aaggccctagtccgagaaagaatgaaagactggaaaaggcgacttgtcactcagctgggg
aaaaagatggttgaaatgactggtgattttactccagacttaatggcccttttgtccgca
gatatcatcatttctactcctgaaaagtgggatggaatcagccgtaactggcacactcga
agctatgttaaaaaggtagggcttatgattttggatgagattcacctacttggagctgat
cgtggaccaattcttgaggtcattgtctcaaggatgagatatatatcgtcacagacagaa
cgttctgtgcgatttgtgggtttatcaacagctttagcaaatgcagggaatttggctgac
tggctgggtgtcggtgaagtgggactctataatttcaagccgagtgtgcgacctgtacca
cttgaagtccatatccagggataccctgggaaattctattgtccaagaatgaatagcatg
aataagcctgcgtatgctgctatctgttcacattcacctacaaagccagttcttatattt
gtttcctcgcgtcgacaaacaagacttactgctttggaccttattcagtatgctgcatct
gatgagcatccaaggaagttcttgaatataccagaagatgcactgcagatgattctttcc
cagatatcagatcaaaacctaaggcacaccttgcagtttggaattggtttgcaccatgct
ggattgaacgacaaggatcgatctgtagttgaagaattgtttggaaacaataagatccag
gtattggtgtcaactagtacattggcttggggtgtgaatcttcctgcacatcttgttatt
ataaagggaacagagttttatgacgggaaatcaaaaagatatgttgattttcctataaca
gatatcttgcaaatgatgggtcgtgctggtcgacctcaatatgaccagcatgggaaagca
gttattttggttcatgaaccaaaaaagagtttctacaaaaagttcctttatgaacccttt
ccagttgagagtagtctcagagagcacttgcacaatcacttcaatgcagaaattgtgtcc
ggcacaatttcccataaggaggatgccatccactacttaacctggacttatctttaccga
aggctgacggttaatccagcttattatggtttggaagatatcaatccagtggtcgtgagc
tcttacttatcaaggttggtgcaaagtacatttgaggatctagaagacagtggttgtata
aaaatggttgaggatagtgtggaaccgatgattctaggctcgattgcatctcaatattac
cttagttatttgaccgtgtcaatgtttggctccaaccttggaccaggcctttcgcttgaa
gtttcattgcatatattatctgctgcttcagagtatgatgagcttcctgtgcggcataat
gaggaaaaccacaatgcaacattagctgagaggcttccatacaaggtggataagaatcgt
cttgatgatccacatgttaaagcaaatttgctctttcaggcacacttttcccagttagag
ctgccagtcagcgactatgtgacagatctaaagtctgttttggatcagagtatacgtata
attcaggccatgatagatgtatgtgccaacagtggatggctttctagcacacttaattgt
atgcatctaatgcagatggtcatgcaggggttgtggtttgacaatggttctgctttacaa
atgttaccctgcttgaacaacaatgttatggttacactcacaagacaaggaatatcaaat
gtgcagcaactattggatgttcctagggcgactatgcaaggtctacttggaagtttccca
gcttcaagtttatacgaggatttgcaaaggtttcctcgcatacatgtgaaattgagactt
aagaaaaagaatgaaagggcaagttctagttctcttaatgtgaggttggagaatgttaat
gccaagcgaaagacaccaagagcatttactcctcgattccccaaggttaaagatgaagcg
tggtggcttgtactcggaaatactgtctcttctgagttatatgcattgaagagagtttca
tttgctgaccacctggttacgaacatagattttccgtcagatttggtcatatgccagggg
ttgaagctcatcttggtctcagattgttatcttggttacgaactggagtactctttggaa
gaacttctcagagatcagccttga
DBGET
integrated database retrieval system
